Os11g0218100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase, RBP11-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0218100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA polymerase, RBP11-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.92 | 0.235 | 9.68 | -0.938 | 0.712 | 0.954 | -0.221 | -0.446 | -0.101 | 6.07 | 17.11 | 1861 | -- | -- |
| 25.09 | 0.233 | 9.67 | -0.854 | 0.71 | 0.943 | -0.126 | -- | -0.0818 | 6.09 | 17.28 | 1968 | -- | -- |
| 24.95 | 0.233 | 9.68 | -0.952 | 0.718 | 0.936 | -- | -0.447 | -0.104 | 6.25 | 17.51 | 2014 | -- | -- |
| 25.1 | 0.233 | 9.66 | -0.836 | 0.716 | 0.935 | -- | -- | -0.0682 | 6.28 | 17.08 | 2029 | -- | -- |
| 44.48 | 0.311 | 9.68 | -0.919 | -- | 1.01 | -- | -0.121 | -0.075 | -- | 13.12 | 2768 | -- | -- |
| 43.71 | 0.31 | 9.62 | -0.492 | 0.649 | -- | -0.241 | -- | 0.125 | 5.86 | -- | -- | -- | -- |
| 43.85 | 0.31 | 9.62 | -0.493 | 0.648 | -- | -- | -- | 0.126 | 5.87 | -- | -- | -- | -- |
| 44.5 | 0.311 | 9.68 | -0.887 | -- | 1.01 | -- | -- | -0.0681 | -- | 13.15 | 2768 | -- | -- |
| 40.1 | 0.295 | 9.63 | -- | 0.699 | 0.534 | -- | -- | 0.102 | 6.09 | 20.9 | 1892 | -- | -- |
| 65.63 | 0.379 | 9.63 | -0.474 | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
| 50.27 | 0.332 | 9.61 | -- | 0.641 | -- | -- | -- | 0.181 | 5.91 | -- | -- | -- | -- |
| 59.26 | 0.359 | 9.64 | -- | -- | 0.531 | -- | -- | 0.0835 | -- | 20.63 | 1314 | -- | -- |
| 71.55 | 0.395 | 9.62 | -- | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 3 | 24.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 44 | 24.48 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |
| 82 | 24.55 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 214 | 24.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 282 | 24.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 283 | 24.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 320 | 24.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 342 | 25.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 343 | 25.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 349 | 25.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 9 |
| 362 | 25.03 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 368 | 25.04 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 422 | 25.08 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 435 | 25.09 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 596 | 25.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 613 | 25.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 650 | 25.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 6 |
| 661 | 25.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |