Os11g0216900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to IDI2.
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Os11g0216900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to IDI2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.85 | 0.22 | 11.6 | -0.366 | 0.527 | -0.495 | -0.22 | 2.08 | -0.0616 | 11 | 94 | 42 | -- | -- |
| 24.28 | 0.23 | 11.7 | -0.379 | 0.522 | -0.633 | -0.39 | -- | -0.0415 | 11.3 | 94.88 | 72 | -- | -- |
| 21.92 | 0.218 | 11.7 | -0.388 | 0.53 | -0.603 | -- | 2.41 | -0.0628 | 11 | 94.43 | 49 | -- | -- |
| 24.53 | 0.231 | 11.7 | -0.387 | 0.541 | -0.843 | -- | -- | -0.0341 | 11 | 94.9 | 78 | -- | -- |
| 39.2 | 0.292 | 11.7 | -0.391 | -- | -0.656 | -- | 2.39 | -0.0696 | -- | 94.34 | 41 | -- | -- |
| 26.76 | 0.243 | 11.7 | -0.397 | 0.543 | -- | -0.359 | -- | -0.0219 | 11.6 | -- | -- | -- | -- |
| 27.31 | 0.245 | 11.7 | -0.411 | 0.545 | -- | -- | -- | -0.0236 | 11.5 | -- | -- | -- | -- |
| 37.76 | 0.286 | 11.7 | -0.432 | -- | -0.381 | -- | -- | -0.0479 | -- | 69.54 | 5 | -- | -- |
| 28.86 | 0.25 | 11.7 | -- | 0.539 | -0.842 | -- | -- | -0.01 | 11 | 94.82 | 75 | -- | -- |
| 45.98 | 0.317 | 11.7 | -0.426 | -- | -- | -- | -- | -0.0296 | -- | -- | -- | -- | -- |
| 31.77 | 0.264 | 11.6 | -- | 0.55 | -- | -- | -- | 0.0222 | 11.6 | -- | -- | -- | -- |
| 42.07 | 0.302 | 11.7 | -- | -- | -0.377 | -- | -- | -0.0115 | -- | 68.35 | 2 | -- | -- |
| 50.77 | 0.333 | 11.7 | -- | -- | -- | -- | -- | 0.0177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.80 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 2 |
| 9 | 22.10 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 11 | 22.11 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 12 | 22.11 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 14 | 22.12 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 22 | 22.16 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 29 | 22.23 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 31 | 22.23 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 76 | 22.73 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 78 | 22.73 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 79 | 22.75 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 88 | 22.92 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 9 | 19 |
| 96 | 22.98 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 8 |
| 127 | 23.14 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 157 | 23.28 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 185 | 23.39 | humidity | 90.0 | 270 | > th | dose dependent | sin | 14 | NA |
| 188 | 23.40 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 229 | 23.55 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 24 | 18 |
| 234 | 23.56 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 242 | 23.57 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 246 | 23.57 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 257 | 23.59 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 286 | 23.62 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 24 | 7 |
| 324 | 23.69 | humidity | 90.0 | 10 | > th | dose dependent | sin | 6 | NA |
| 370 | 23.72 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 412 | 23.80 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 442 | 23.84 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 443 | 23.84 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 444 | 23.84 | atmosphere | 1005.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 456 | 23.86 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 474 | 23.89 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 481 | 23.89 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 11 | 20 |
| 489 | 23.90 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 529 | 23.94 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 551 | 23.95 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 578 | 23.96 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 580 | 23.97 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 592 | 23.98 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 595 | 23.98 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 7 |
| 600 | 23.98 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 610 | 23.99 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 729 | 24.04 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 13 | 18 |
| 758 | 24.05 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 24 | 11 |
| 851 | 24.07 | humidity | 90.0 | 30 | > th | dose dependent | no | NA | NA |
| 852 | 24.07 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 872 | 24.07 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 875 | 24.07 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 13 | 23 |