Os11g0216000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyruvate kinase family protein.
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Os11g0216000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pyruvate kinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.54 | 0.389 | 9.43 | -0.729 | 0.779 | 2 | 0.165 | 1.21 | -0.141 | 13.3 | 23.09 | 473 | -- | -- |
| 70.19 | 0.39 | 9.41 | -0.58 | 0.756 | 1.78 | 0.176 | -- | -0.114 | 13.2 | 23.19 | 503 | -- | -- |
| 68.64 | 0.386 | 9.43 | -0.725 | 0.779 | 2.02 | -- | 1.25 | -0.143 | 13.3 | 23.01 | 472 | -- | -- |
| 70.35 | 0.391 | 9.41 | -0.575 | 0.769 | 1.79 | -- | -- | -0.108 | 13.2 | 23.2 | 487 | -- | -- |
| 93.75 | 0.451 | 9.42 | -0.675 | -- | 1.9 | -- | 0.987 | -0.0579 | -- | 24.93 | 841 | -- | -- |
| 109.5 | 0.491 | 9.47 | -1.02 | 0.802 | -- | 0.243 | -- | -0.393 | 12.5 | -- | -- | -- | -- |
| 109.75 | 0.491 | 9.47 | -1.01 | 0.802 | -- | -- | -- | -0.392 | 12.5 | -- | -- | -- | -- |
| 94.41 | 0.453 | 9.39 | -0.496 | -- | 1.87 | -- | -- | -0.00221 | -- | 25.39 | 886 | -- | -- |
| 78.05 | 0.411 | 9.39 | -- | 0.758 | 2.04 | -- | -- | -0.0141 | 13.4 | 23.2 | 515 | -- | -- |
| 150.08 | 0.572 | 9.48 | -1.04 | -- | -- | -- | -- | -0.405 | -- | -- | -- | -- | -- |
| 136.7 | 0.547 | 9.44 | -- | 0.817 | -- | -- | -- | -0.279 | 12.6 | -- | -- | -- | -- |
| 100.04 | 0.466 | 9.37 | -- | -- | 2.08 | -- | -- | 0.0904 | -- | 25.34 | 901 | -- | -- |
| 178.57 | 0.624 | 9.46 | -- | -- | -- | -- | -- | -0.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 14 | 71.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 18 | 71.46 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 30 | 71.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 34 | 71.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 47 | 71.63 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 54 | 71.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 57 | 71.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 22 |
| 80 | 71.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 91 | 71.83 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 101 | 71.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 258 | 72.45 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 284 | 72.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 314 | 72.66 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 342 | 72.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 360 | 72.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 397 | 72.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 426 | 73.03 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 452 | 73.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 459 | 73.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 490 | 73.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 519 | 73.36 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 21 |
| 558 | 73.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 578 | 73.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 589 | 73.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 614 | 73.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 623 | 73.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 644 | 73.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 668 | 73.87 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 688 | 73.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 2 |
| 696 | 73.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 703 | 73.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 11 |