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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0214700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant disease resistance response protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.84 (0.0462) R2 : 0.529
β1 : 1.65 (0.168) R2dD : 0.105 R2D : 0.084
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.04 (0.102) R2dE : 0.465 R2E : 0.425
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.197 (0.103) R2dN8 : 0.0073 R2N8 : -0.029
σ : 0.854
deviance : 335.83
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C
peak time of C : --
E
wheather : temperature
threshold : 25.69
memory length : 739
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.6
open length of G : 0.133

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
311.16 0.829 3.9 0.778 0.669 1.64 -2.49 3.42 -0.0902 2.25 25.5 748 19.2 0.799
322.1 0.836 3.9 1.55 0.525 1.87 1.09 -- 0.109 3.17 25.7 737 19.6 0.166
315.25 0.827 3.91 1.29 0.569 1.76 -- 1.94 0.00857 2.07 25.7 745 19.2 0.867
326.66 0.842 3.9 1.6 0.504 1.85 -- -- 0.103 3.47 25.69 737 19.6 0.162
323.43 0.838 3.93 1.34 -- 2.02 -- 1.92 0.0886 -- 26 766 18.8 0.847
486.19 1.03 3.98 1.33 1.57 -- 0.881 -- -0.429 1.63 -- -- -- --
489.27 1.04 3.98 1.3 1.57 -- -- -- -0.434 1.66 -- -- -- --
335.83 0.854 3.84 1.65 -- 2.04 -- -- 0.197 -- 25.69 739 19.6 0.133
395.15 0.926 3.91 -- 0.578 1.77 -- -- 0.0586 3.01 25.7 737 19.6 0.165
639.14 1.18 3.96 1.36 -- -- -- -- -0.399 -- -- -- -- --
533.69 1.08 4.01 -- 1.59 -- -- -- -0.578 1.69 -- -- -- --
408.97 0.942 3.84 -- -- 1.98 -- -- 0.0657 -- 25.63 739 19.6 0.149
688.05 1.22 3.99 -- -- -- -- -- -0.55 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 332.50 temperature 25 720 < th dose independent rect. 19 1
3 337.87 radiation 1 720 < th dose dependent rect. 5 14
5 342.68 radiation 1 720 < th dose dependent rect. 14 13
8 343.41 radiation 1 720 < th dose independent rect. 14 13
9 344.18 radiation 1 720 < th dose independent sin 15 NA
16 345.36 radiation 1 720 < th dose dependent rect. 5 22
22 346.21 radiation 1 720 < th dose dependent sin 21 NA
27 346.90 humidity 70 720 > th dose dependent rect. 18 3
31 347.48 radiation 1 720 < th dose independent rect. 14 5
35 347.77 radiation 1 720 < th dose dependent sin 15 NA
40 348.65 radiation 1 720 < th dose dependent rect. 14 5
44 348.99 radiation 1 720 > th dose independent rect. 13 17
47 349.25 radiation 1 720 > th dose independent sin 15 NA
50 349.43 temperature 30 720 < th dose dependent rect. 18 1
64 350.90 radiation 1 720 < th dose dependent rect. 10 9
68 351.30 temperature 30 720 < th dose dependent rect. 18 3
69 351.31 temperature 30 4320 < th dose dependent rect. 6 1
75 351.76 temperature 15 4320 > th dose dependent rect. 6 1
78 351.87 radiation 1 720 > th dose independent rect. 11 19
96 352.98 radiation 1 1440 < th dose dependent rect. 8 22
114 353.53 temperature 15 4320 > th dose dependent rect. 18 13
120 353.70 temperature 30 4320 < th dose dependent rect. 18 13
131 353.92 temperature 20 4320 > th dose dependent rect. 21 10
172 354.40 temperature 10 4320 > th dose dependent rect. 24 8
261 355.05 radiation 1 14400 < th dose dependent rect. 16 2
290 355.30 temperature 15 4320 > th dose dependent sin 11 NA
338 355.73 humidity 80 720 > th dose independent rect. 18 2
339 355.74 temperature 30 4320 < th dose dependent sin 11 NA
344 355.78 radiation 1 4320 < th dose dependent rect. 12 6
379 356.07 temperature 25 4320 < th dose dependent rect. 24 1
387 356.11 radiation 1 14400 < th dose independent rect. 8 10
399 356.17 radiation 1 1440 < th dose dependent rect. 9 15
412 356.24 radiation 1 14400 < th dose independent rect. 15 3
441 356.40 temperature 10 4320 > th dose dependent rect. 24 1
486 356.62 humidity 80 720 > th dose independent rect. 16 4
558 356.93 temperature 20 4320 > th dose dependent rect. 21 2
620 357.22 radiation 1 14400 < th dose independent rect. 15 9
627 357.24 radiation 1 14400 < th dose independent rect. 15 14
649 357.35 radiation 1 14400 < th dose independent rect. 15 12
740 357.72 radiation 1 14400 < th dose independent rect. 9 15
763 357.79 radiation 1 720 > th dose independent rect. 11 8
776 357.81 radiation 1 14400 > th dose independent rect. 16 1
782 357.82 radiation 1 14400 < th dose independent rect. 9 20
797 357.85 radiation 1 14400 < th dose independent rect. 9 18
864 358.09 radiation 1 14400 < th dose independent sin 18 NA
939 358.47 humidity 90 720 < th dose independent rect. 21 2
940 358.47 radiation 1 720 < th dose independent rect. 5 23
962 358.60 radiation 1 720 > th dose independent rect. 17 13
973 358.66 temperature 25 720 > th dose dependent sin 13 NA