Os11g0213900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os11g0213900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.79 | 0.318 | 8.76 | 0.806 | 0.136 | -1.4 | -0.378 | 0.89 | 0.309 | 22.1 | 19.64 | 5890 | -- | -- |
| 46.64 | 0.318 | 8.77 | 0.644 | 0.146 | -1.44 | -0.393 | -- | 0.338 | 22.4 | 18 | 7323 | -- | -- |
| 46.29 | 0.317 | 8.75 | 0.881 | 0.131 | -1.38 | -- | 1.18 | 0.326 | 22.2 | 20.31 | 5938 | -- | -- |
| 47.17 | 0.32 | 8.77 | 0.658 | 0.146 | -1.44 | -- | -- | 0.338 | 23.1 | 18 | 7279 | -- | -- |
| 47.45 | 0.321 | 8.74 | 0.876 | -- | -1.37 | -- | 1.18 | 0.325 | -- | 20.35 | 5913 | -- | -- |
| 99.85 | 0.468 | 8.88 | -0.169 | 0.118 | -- | -0.495 | -- | -0.13 | 21.5 | -- | -- | -- | -- |
| 100.76 | 0.47 | 8.88 | -0.151 | 0.12 | -- | -- | -- | -0.13 | 21.7 | -- | -- | -- | -- |
| 48.49 | 0.324 | 8.77 | 0.659 | -- | -1.44 | -- | -- | 0.336 | -- | 18 | 7311 | -- | -- |
| 52.99 | 0.339 | 8.82 | -- | 0.144 | -1.14 | -- | -- | 0.13 | 0.312 | 21.3 | 5863 | -- | -- |
| 101.61 | 0.471 | 8.87 | -0.15 | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
| 101.36 | 0.471 | 8.87 | -- | 0.119 | -- | -- | -- | -0.113 | 21.6 | -- | -- | -- | -- |
| 54.08 | 0.343 | 8.82 | -- | -- | -1.13 | -- | -- | 0.111 | -- | 21.4 | 5910 | -- | -- |
| 102.2 | 0.472 | 8.87 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.20 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 2 | 42.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 5 | 42.54 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 15 | 42.58 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 17 | 42.71 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 21 | 43.11 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 22 | 43.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 24 | 43.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 27 | 43.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 34 | 43.30 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 36 | 43.30 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 40 | 43.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 55 | 43.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 66 | 43.85 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 83 | 44.24 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 7 |
| 88 | 44.27 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 104 | 44.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 117 | 44.47 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 125 | 44.55 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 22 |
| 132 | 44.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 145 | 44.65 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 21 |
| 148 | 44.67 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 159 | 44.70 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 171 | 44.73 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 15 |
| 178 | 44.76 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 186 | 44.79 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 213 | 44.86 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 226 | 44.90 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 232 | 44.91 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 247 | 44.92 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 282 | 44.97 | temperature | 20 | 4320 | > th | dose dependent | sin | 8 | NA |
| 320 | 45.03 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 404 | 45.20 | radiation | 1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 456 | 45.34 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 3 |
| 463 | 45.35 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 478 | 45.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 19 |
| 498 | 45.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 20 |
| 514 | 45.43 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 13 |
| 532 | 45.46 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 566 | 45.51 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 589 | 45.53 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 591 | 45.54 | humidity | 90 | 43200 | > th | dose dependent | sin | 5 | NA |
| 640 | 45.61 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 698 | 45.70 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 9 |
| 701 | 45.70 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 12 |
| 706 | 45.71 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 707 | 45.71 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 723 | 45.73 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 21 |
| 733 | 45.74 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 747 | 45.76 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 765 | 45.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 770 | 45.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 16 |
| 882 | 45.87 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 22 |
| 935 | 45.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 944 | 45.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 20 |
| 949 | 45.93 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 2 |