Os11g0213800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR disease resistance protein homologue (Fragment).
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Os11g0213800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR disease resistance protein homologue (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.3 | 0.551 | 5.58 | 1.54 | 0.914 | -1.02 | -0.547 | 3.05 | -0.137 | 15.8 | 25.6 | 3138 | -- | -- |
| 140.79 | 0.553 | 5.64 | 1.34 | 0.938 | -1 | -0.624 | -- | -0.172 | 15.8 | 21.2 | 8913 | -- | -- |
| 137.76 | 0.547 | 5.58 | 1.59 | 0.924 | -1 | -- | 3.11 | -0.143 | 15.8 | 25.85 | 3168 | -- | -- |
| 140.98 | 0.553 | 5.64 | 1.17 | 0.936 | -0.972 | -- | -- | -0.228 | 15.7 | 21.02 | 8900 | -- | -- |
| 177.16 | 0.62 | 5.57 | 1.52 | -- | -1.14 | -- | 2.74 | -0.0961 | -- | 25.46 | 2656 | -- | -- |
| 160.1 | 0.593 | 5.72 | 0.429 | 0.952 | -- | -0.54 | -- | -0.572 | 15.6 | -- | -- | -- | -- |
| 160.99 | 0.594 | 5.73 | 0.42 | 0.949 | -- | -- | -- | -0.575 | 15.6 | -- | -- | -- | -- |
| 188 | 0.639 | 5.64 | 0.891 | -- | -0.813 | -- | -- | -0.251 | -- | 23.3 | 6780 | -- | -- |
| 155.38 | 0.581 | 5.7 | -- | 0.93 | -0.497 | -- | -- | -0.465 | 15.9 | 28.3 | 7892 | -- | -- |
| 211.2 | 0.679 | 5.72 | 0.38 | -- | -- | -- | -- | -0.6 | -- | -- | -- | -- | -- |
| 165.64 | 0.602 | 5.74 | -- | 0.941 | -- | -- | -- | -0.622 | 15.6 | -- | -- | -- | -- |
| 199.64 | 0.658 | 5.7 | -- | -- | -0.536 | -- | -- | -0.504 | -- | 28.42 | 6949 | -- | -- |
| 215.01 | 0.684 | 5.73 | -- | -- | -- | -- | -- | -0.642 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 9 | 135.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 12 | 135.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 19 | 136.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 20 | 136.31 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 21 | 136.33 | temperature | 25 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 22 | 136.33 | temperature | 25 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 30 | 136.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 31 | 136.71 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 20 |
| 32 | 136.72 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 35 | 136.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 20 |
| 36 | 136.77 | temperature | 20 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 42 | 136.80 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 53 | 136.82 | humidity | 70 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 58 | 136.84 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 60 | 136.84 | temperature | 25 | 14400 | > th | dose independent | rect. | 13 | 21 |
| 61 | 136.84 | humidity | 70 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 68 | 136.86 | temperature | 25 | 14400 | < th | dose independent | rect. | 13 | 21 |
| 89 | 136.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 100 | 136.92 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 20 |
| 104 | 136.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 113 | 136.94 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 20 |
| 138 | 136.97 | temperature | 25 | 14400 | < th | dose independent | sin | 4 | NA |
| 144 | 136.97 | temperature | 25 | 14400 | > th | dose independent | rect. | 13 | 18 |
| 186 | 137.00 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 211 | 137.01 | temperature | 25 | 14400 | < th | dose independent | rect. | 13 | 18 |
| 219 | 137.01 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 222 | 137.02 | temperature | 25 | 14400 | > th | dose independent | sin | 4 | NA |
| 223 | 137.02 | temperature | 25 | 14400 | < th | dose independent | no | NA | NA |
| 239 | 137.02 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 243 | 137.03 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 291 | 137.06 | temperature | 25 | 14400 | > th | dose independent | sin | 17 | NA |
| 308 | 137.07 | temperature | 25 | 14400 | < th | dose independent | sin | 17 | NA |
| 512 | 137.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 4 |
| 535 | 137.22 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 567 | 137.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 589 | 137.30 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 596 | 137.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 12 |
| 610 | 137.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 658 | 137.42 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 686 | 137.45 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 8 |
| 719 | 137.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 12 |
| 800 | 137.55 | humidity | 70 | 43200 | > th | dose dependent | rect. | 8 | 11 |
| 801 | 137.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 805 | 137.56 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 833 | 137.58 | temperature | 25 | 14400 | > th | dose dependent | sin | 3 | NA |
| 892 | 137.64 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 921 | 137.67 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 934 | 137.68 | humidity | 80 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 949 | 137.69 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 953 | 137.69 | temperature | 15 | 1440 | > th | dose dependent | sin | 8 | NA |