Os11g0213700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, typical subtype containing protein.
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Os11g0213700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, typical subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.04 | 0.342 | 6.36 | 0.867 | 0.268 | 0.44 | 0.0207 | 2.95 | 0.689 | 16.6 | 0.5 | 5358 | -- | -- |
| 55.19 | 0.346 | 6.39 | 0.915 | 0.268 | 0.791 | 0.0258 | -- | 0.695 | 16.4 | 0.5724 | 3482 | -- | -- |
| 53.04 | 0.339 | 6.36 | 0.867 | 0.268 | 0.44 | -- | 2.95 | 0.689 | 16.6 | 0.5 | 5358 | -- | -- |
| 53.82 | 0.342 | 6.39 | 0.925 | 0.261 | 0.791 | -- | -- | 0.708 | 16.4 | 0.6157 | 17316 | -- | -- |
| 56.88 | 0.351 | 6.36 | 0.867 | -- | 0.441 | -- | 2.95 | 0.689 | -- | 0.5 | 5358 | -- | -- |
| 65.84 | 0.38 | 6.4 | 1.14 | 0.254 | -- | -0.108 | -- | 0.654 | 16.5 | -- | -- | -- | -- |
| 65.87 | 0.38 | 6.4 | 1.14 | 0.253 | -- | -- | -- | 0.653 | 16.6 | -- | -- | -- | -- |
| 56.58 | 0.35 | 6.39 | 0.869 | -- | 0.748 | -- | -- | 0.718 | -- | 1 | 17321 | -- | -- |
| 66.5 | 0.38 | 6.39 | -- | 0.206 | 1.1 | -- | -- | 0.69 | 16.4 | 0.7261 | 20680 | -- | -- |
| 69.28 | 0.389 | 6.4 | 1.13 | -- | -- | -- | -- | 0.646 | -- | -- | -- | -- | -- |
| 100 | 0.468 | 6.43 | -- | 0.232 | -- | -- | -- | 0.526 | 16.7 | -- | -- | -- | -- |
| 67.34 | 0.382 | 6.39 | -- | -- | 1.04 | -- | -- | 0.694 | -- | 1 | 27647 | -- | -- |
| 102.86 | 0.473 | 6.43 | -- | -- | -- | -- | -- | 0.521 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 2 | 50.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 3 | 50.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 4 | 50.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 5 | 50.82 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 15 |
| 6 | 50.82 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 17 |
| 7 | 50.82 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 17 |
| 8 | 50.82 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 15 |
| 9 | 50.82 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 17 |
| 10 | 50.85 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 15 |
| 18 | 50.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 15 |
| 19 | 50.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 20 | 50.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 7 |
| 23 | 50.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 25 | 51.00 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 26 | 51.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 27 | 51.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 28 | 51.01 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 31 | 51.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 32 | 51.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 13 |
| 51 | 51.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 52 | 51.08 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 54 | 51.08 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 58 | 51.10 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 2 | NA |
| 61 | 51.10 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 2 | NA |
| 69 | 51.12 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 2 | NA |
| 106 | 51.26 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 3 | NA |
| 111 | 51.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 7 |
| 141 | 51.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 20 |
| 146 | 51.43 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 148 | 51.43 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 151 | 51.44 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |
| 221 | 51.75 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 15 |
| 231 | 51.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 13 |
| 239 | 51.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 246 | 51.84 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 11 |
| 260 | 51.90 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 276 | 51.96 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 278 | 51.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 280 | 51.97 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 282 | 51.97 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 290 | 52.02 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 299 | 52.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 315 | 52.10 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 327 | 52.13 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 384 | 52.22 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 419 | 52.32 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 513 | 52.64 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 11 |
| 514 | 52.64 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 11 |
| 520 | 52.66 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 524 | 52.67 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 526 | 52.67 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 554 | 52.73 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 578 | 52.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 584 | 52.82 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 587 | 52.82 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 589 | 52.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 590 | 52.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 592 | 52.83 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 595 | 52.84 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 599 | 52.84 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 602 | 52.84 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 12 |
| 608 | 52.84 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 614 | 52.85 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 619 | 52.85 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 622 | 52.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 628 | 52.86 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 22 |
| 653 | 52.88 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 654 | 52.88 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 660 | 52.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 661 | 52.89 | humidity | 60.0 | 14400 | < th | dose independent | sin | 21 | NA |
| 667 | 52.89 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 677 | 52.90 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 694 | 52.90 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 6 |
| 700 | 52.91 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |
| 702 | 52.91 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 6 |
| 847 | 52.96 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 21 |
| 879 | 52.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 883 | 52.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 890 | 52.99 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 901 | 53.00 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 902 | 53.00 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 6 |
| 930 | 53.02 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 934 | 53.02 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 19 | 22 |
| 959 | 53.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |