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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0213500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.12 (0.0315) R2 : 0.727
β1 : 1.59 (0.116) R2dD : 0.122 R2D : 0.0682
β2 : 2.42 (0.0769) R2dC : 0.599 R2C : 0.578
β3 : -1.39 (0.142) R2dE : 0.0693 R2E : -0.000785
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.483 (0.072) R2dN8 : 0.0463 R2N8 : -0.0292
σ : 0.576
deviance : 152.98
__
_____
C
peak time of C : 20.8
E
wheather : radiation
threshold : 1.37
memory length : 10487
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.97 0.583 5.11 1.51 2.36 -1.31 0.412 -0.496 0.504 21.1 1.177 10183 -- --
152.54 0.575 5.12 1.57 2.39 -1.4 0.4 -- 0.475 20.8 1.45 10483 -- --
153.52 0.577 5.11 1.57 2.34 -1.31 -- -0.492 0.497 21 1.173 11747 -- --
152.98 0.576 5.12 1.59 2.42 -1.39 -- -- 0.483 20.8 1.37 10487 -- --
328.93 0.849 5.1 1.32 -- -1.29 -- 0.168 0.249 -- 1.18 11745 -- --
181.24 0.631 5.17 1.32 2.4 -- 0.418 -- 0.226 21.2 -- -- -- --
181.85 0.632 5.17 1.3 2.4 -- -- -- 0.226 21.2 -- -- -- --
327.83 0.847 5.1 1.32 -- -1.29 -- -- 0.247 -- 1.158 18945 -- --
210.5 0.676 5.16 -- 2.51 -0.814 -- -- 0.415 20.9 6.902 9218 -- --
514.66 1.06 5.11 1.31 -- -- -- -- 0.214 -- -- -- -- --
226.44 0.704 5.2 -- 2.4 -- -- -- 0.0809 21.2 -- -- -- --
373.94 0.904 5.13 -- -- -1.29 -- -- 0.0998 -- 1.158 18945 -- --
559.83 1.1 5.14 -- -- -- -- -- 0.0686 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.36 wind 9 43200 > th dose dependent rect. 19 8
4 146.50 wind 9 43200 > th dose dependent rect. 19 5
7 146.68 humidity 70 14400 < th dose dependent rect. 18 2
8 146.69 wind 9 43200 > th dose independent rect. 19 8
9 146.69 wind 9 43200 < th dose independent rect. 19 8
10 146.71 humidity 70 14400 < th dose dependent rect. 18 13
27 146.89 wind 9 43200 < th dose independent rect. 19 6
31 146.96 wind 9 43200 > th dose independent rect. 19 5
41 147.44 wind 9 43200 > th dose independent rect. 19 12
44 147.93 humidity 80 14400 > th dose dependent rect. 22 1
46 147.95 wind 9 43200 < th dose independent rect. 19 12
53 148.27 humidity 80 14400 > th dose dependent rect. 21 3
58 148.51 humidity 80 14400 > th dose dependent rect. 18 9
60 148.53 humidity 90 14400 < th dose independent rect. 20 6
61 148.59 humidity 80 14400 > th dose dependent rect. 20 6
65 148.64 radiation 10 14400 < th dose independent rect. 17 3
76 148.73 radiation 10 14400 < th dose independent rect. 17 12
83 148.79 radiation 10 14400 < th dose independent rect. 17 9
89 148.86 wind 9 43200 > th dose dependent rect. 17 14
99 148.96 radiation 1 14400 > th dose dependent rect. 18 1
112 149.02 humidity 90 43200 > th dose independent rect. 9 1
122 149.17 humidity 90 43200 < th dose independent rect. 7 1
124 149.19 humidity 90 43200 < th dose independent rect. 5 5
129 149.25 wind 5 43200 > th dose dependent rect. 6 1
134 149.28 humidity 90 43200 < th dose independent rect. 7 3
147 149.40 radiation 10 14400 > th dose dependent rect. 17 13
153 149.46 humidity 90 43200 > th dose independent rect. 5 5
158 149.48 humidity 90 43200 > th dose independent rect. 6 2
166 149.52 humidity 90 43200 < th dose independent rect. 4 11
174 149.56 humidity 90 14400 > th dose independent rect. 21 5
179 149.61 wind 9 43200 > th dose dependent rect. 17 10
188 149.67 humidity 80 14400 > th dose dependent sin 14 NA
194 149.69 radiation 1 14400 > th dose independent rect. 18 12
195 149.70 humidity 80 43200 > th dose dependent rect. 6 5
197 149.72 wind 9 43200 < th dose independent rect. 19 2
215 149.84 humidity 80 43200 > th dose dependent rect. 5 7
216 149.85 humidity 80 43200 > th dose dependent rect. 9 1
225 149.90 wind 5 43200 > th dose independent rect. 6 1
236 149.94 wind 1 43200 > th dose dependent sin 4 NA
239 149.94 wind 3 43200 > th dose dependent rect. 24 16
249 149.98 wind 1 43200 > th dose dependent rect. 3 12
251 149.99 humidity 90 43200 > th dose independent rect. 4 12
256 150.01 humidity 90 14400 < th dose independent sin 13 NA
267 150.05 wind 5 43200 < th dose independent rect. 6 1
285 150.11 wind 9 43200 > th dose independent rect. 17 15
301 150.15 wind 1 43200 > th dose dependent rect. 4 10
307 150.16 wind 7 43200 < th dose dependent rect. 3 12
324 150.20 humidity 70 14400 < th dose independent rect. 19 13
325 150.20 wind 9 43200 < th dose dependent sin 4 NA
353 150.23 humidity 90 43200 > th dose dependent rect. 6 1
356 150.24 humidity 80 14400 > th dose independent rect. 14 6
359 150.24 wind 9 43200 < th dose dependent rect. 24 15
371 150.27 wind 3 43200 > th dose dependent rect. 20 20
377 150.30 humidity 60 14400 < th dose independent rect. 18 1
382 150.31 radiation 10 4320 < th dose dependent rect. 18 11
393 150.35 humidity 90 14400 < th dose independent rect. 22 1
394 150.35 wind 9 43200 > th dose independent rect. 19 2
403 150.36 humidity 80 43200 > th dose independent rect. 23 1
406 150.37 humidity 80 14400 > th dose independent rect. 17 2
411 150.38 wind 9 43200 > th dose dependent sin 13 NA
433 150.42 humidity 60 14400 > th dose independent rect. 18 13
434 150.42 wind 9 43200 < th dose dependent rect. 4 10
443 150.45 humidity 60 14400 > th dose independent rect. 18 2
465 150.50 wind 5 43200 > th dose dependent rect. 15 21
467 150.51 humidity 60 14400 > th dose independent rect. 18 11
469 150.52 humidity 90 43200 < th dose independent sin 2 NA
485 150.54 humidity 90 43200 < th dose independent rect. 4 18
490 150.55 radiation 20 4320 < th dose independent rect. 16 16
496 150.56 wind 9 43200 < th dose independent rect. 19 16
512 150.60 humidity 80 14400 < th dose independent rect. 14 6
527 150.63 atmosphere 995 43200 < th dose dependent rect. 14 2
531 150.64 wind 9 43200 < th dose independent rect. 17 18
534 150.64 wind 7 43200 > th dose dependent rect. 17 21
536 150.65 humidity 60 14400 > th dose independent rect. 18 6
540 150.65 wind 1 43200 > th dose dependent rect. 4 6
571 150.70 wind 5 43200 < th dose independent rect. 4 12
575 150.70 wind 7 43200 > th dose dependent rect. 19 19
576 150.71 humidity 60 14400 > th dose independent rect. 18 8
593 150.73 radiation 10 4320 < th dose dependent rect. 18 2
605 150.75 radiation 30 14400 > th dose independent rect. 7 1
629 150.76 wind 5 43200 > th dose independent rect. 4 12
712 150.85 wind 9 43200 < th dose dependent rect. 20 19
766 150.93 wind 9 43200 > th dose independent sin 12 NA
791 150.96 wind 5 43200 < th dose independent sin 3 NA
794 150.96 wind 5 43200 < th dose independent rect. 20 21
839 151.01 humidity 90 43200 > th dose independent sin 1 NA
841 151.01 radiation 10 1440 < th dose independent rect. 16 14
846 151.02 wind 9 43200 < th dose independent sin 11 NA
848 151.02 humidity 60 14400 < th dose independent rect. 18 4
864 151.02 humidity 80 43200 > th dose dependent rect. 5 16
865 151.03 radiation 1 14400 < th dose independent rect. 5 1
869 151.03 wind 5 43200 > th dose independent rect. 19 22
885 151.05 radiation 1 14400 > th dose independent rect. 5 1
898 151.06 wind 1 43200 > th dose dependent rect. 24 10
931 151.10 wind 5 43200 > th dose independent sin 2 NA
965 151.13 temperature 20 1440 > th dose dependent rect. 14 7
972 151.14 wind 9 43200 > th dose independent rect. 17 18