Os11g0213000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os11g0213000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 401.49 | 0.941 | 5.68 | -0.631 | 0.269 | -1.33 | -0.817 | 2.34 | -0.436 | 2.08 | 1006 | 476 | -- | -- |
| 405.31 | 0.938 | 5.67 | -0.695 | 0.24 | -1.55 | -1.22 | -- | -0.439 | 0.855 | 1006 | 1131 | -- | -- |
| 403.47 | 0.936 | 5.67 | -0.605 | 0.287 | -1.41 | -- | 2.55 | -0.421 | 3.26 | 1006 | 475 | -- | -- |
| 410.94 | 0.944 | 5.65 | -0.627 | 0.279 | -1.58 | -- | -- | -0.416 | 1.84 | 1006 | 1112 | -- | -- |
| 407.52 | 0.94 | 5.67 | -0.627 | -- | -1.43 | -- | 2.5 | -0.408 | -- | 1006 | 569 | -- | -- |
| 441.58 | 0.985 | 5.72 | -0.484 | 0.385 | -- | -1.38 | -- | -0.679 | 1.27 | -- | -- | -- | -- |
| 449 | 0.992 | 5.71 | -0.438 | 0.399 | -- | -- | -- | -0.673 | 2.06 | -- | -- | -- | -- |
| 414.74 | 0.948 | 5.65 | -0.605 | -- | -1.68 | -- | -- | -0.388 | -- | 1006 | 1067 | -- | -- |
| 420.36 | 0.955 | 5.64 | -- | 0.255 | -1.47 | -- | -- | -0.354 | 1.66 | 1005 | 1069 | -- | -- |
| 458.57 | 1 | 5.71 | -0.421 | -- | -- | -- | -- | -0.664 | -- | -- | -- | -- | -- |
| 454.05 | 0.997 | 5.7 | -- | 0.391 | -- | -- | -- | -0.624 | 2.04 | -- | -- | -- | -- |
| 424.08 | 0.959 | 5.63 | -- | -- | -1.56 | -- | -- | -0.334 | -- | 1006 | 1025 | -- | -- |
| 463.26 | 1 | 5.7 | -- | -- | -- | -- | -- | -0.617 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 397.13 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 24 | 18 |
| 5 | 397.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 6 |
| 23 | 398.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 9 |
| 27 | 398.47 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 15 |
| 47 | 398.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 48 | 398.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 12 |
| 63 | 399.23 | atmosphere | 1005 | 720 | > th | dose dependent | sin | 6 | NA |
| 68 | 399.36 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 78 | 399.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 13 |
| 79 | 399.54 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 21 | 15 |
| 90 | 399.68 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 106 | 399.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 11 |
| 145 | 400.32 | atmosphere | 1010 | 720 | > th | dose independent | sin | 6 | NA |
| 163 | 400.45 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 4 | 7 |
| 179 | 400.64 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 1 | 10 |
| 189 | 400.70 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 195 | 400.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 210 | 400.84 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 6 |
| 212 | 400.85 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 9 |
| 215 | 400.86 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 24 | 13 |
| 220 | 400.89 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 3 | 8 |
| 231 | 400.93 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 3 | 10 |
| 284 | 401.24 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 8 | 3 |
| 290 | 401.29 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 9 | 1 |
| 324 | 401.42 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 360 | 401.63 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 3 | 2 |
| 397 | 401.85 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 7 | 6 |
| 435 | 402.12 | atmosphere | 1005 | 270 | > th | dose dependent | sin | 22 | NA |
| 440 | 402.16 | atmosphere | 1010 | 720 | < th | dose independent | sin | 6 | NA |
| 530 | 402.63 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 533 | 402.65 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 539 | 402.69 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 555 | 402.75 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 568 | 402.84 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 3 | 16 |
| 571 | 402.86 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 574 | 402.88 | atmosphere | 1005 | 720 | > th | dose dependent | no | NA | NA |
| 577 | 402.91 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 8 | 5 |
| 599 | 403.14 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 606 | 403.18 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 7 | 14 |
| 680 | 403.56 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 709 | 403.70 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 718 | 403.77 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 4 | 1 |
| 739 | 403.87 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 1 | 4 |
| 756 | 403.94 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 17 | 18 |
| 769 | 403.98 | atmosphere | 1005 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 796 | 404.08 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 9 | 8 |
| 827 | 404.26 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 857 | 404.37 | atmosphere | 1005 | 1440 | > th | dose dependent | rect. | 16 | 12 |
| 871 | 404.44 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 915 | 404.61 | atmosphere | 1005 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 920 | 404.63 | atmosphere | 1005 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 954 | 404.76 | atmosphere | 1005 | 1440 | > th | dose dependent | rect. | 22 | 6 |
| 966 | 404.78 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 1 |