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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0212900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.127) R2 : 0.248
β1 : 1.73 (0.293) R2dD : 0.198 R2D : -0.559
β2 : 0.746 (0.108) R2dC : 0.0788 R2C : -0.326
β3 : 10.4 (1.92) R2dE : 3.7 R2E : -3.01
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 25.7 (5.7) R2dD*E : 2.52 R2D*E : -3.1
γ1 : -0.386 (0.101) R2dN8 : 0.0376 R2N8 : -0.253
σ : 0.82
deviance : 309.91
__
_____
C
peak time of C : 2.75
E
wheather : radiation
threshold : 1.565
memory length : 1746
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.01
open length of G : 1.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
297.74 0.811 4 1.79 0.737 10.5 1.86 25.5 -0.368 2.57 1.563 1746 4.01 1.02
859.52 1.37 3.82 2.54 1.05 10.4 1.99 -- -0.205 2.71 2.705 2963 4.05 0.999
309.91 0.82 4.01 1.73 0.746 10.4 -- 25.7 -0.386 2.75 1.565 1746 4.01 1.02
670.69 1.21 3.28 3.43 1.02 9.9 -- -- 0.343 2.09 2.999 2963 4.03 0.994
342.31 0.862 4 1.77 -- 10.5 -- 25.6 -0.362 -- 1.63 1746 4.02 1.02
349.08 0.876 3.51 0.0434 0.758 -- 1.72 -- -0.486 2.63 -- -- -- --
359.3 0.888 3.52 -0.000169 0.77 -- -- -- -0.497 2.9 -- -- -- --
566.84 1.11 3.26 4.58 -- 7.94 -- -- 0.976 -- 2.499 2970 4.05 1
943.42 1.43 3.37 -- 1.32 9.77 -- -- 0.035 1.97 6.164 2985 3.92 0.863
393.47 0.927 3.51 0.0327 -- -- -- -- -0.477 -- -- -- -- --
359.3 0.887 3.52 -- 0.77 -- -- -- -0.497 2.9 -- -- -- --
702.93 1.23 3.26 -- -- 7.29 -- -- 0.62 -- 0.6067 3073 4.07 0.748
393.49 0.926 3.51 -- -- -- -- -- -0.481 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 302.52 radiation 1 1440 > th dose independent rect. 4 1
11 302.52 radiation 1 1440 > th dose dependent rect. 4 1
21 303.15 humidity 60 14400 > th dose independent rect. 20 12
22 303.83 humidity 60 14400 < th dose independent rect. 6 1
24 303.83 humidity 60 14400 < th dose independent rect. 20 1
26 303.83 radiation 20 14400 > th dose independent rect. 17 1
77 303.83 humidity 60 14400 < th dose dependent rect. 6 1
79 303.83 humidity 60 14400 < th dose dependent rect. 20 1
81 303.83 radiation 20 14400 > th dose dependent rect. 17 1
132 304.12 humidity 60 14400 > th dose independent rect. 24 8
134 304.44 radiation 1 1440 < th dose independent rect. 9 2
135 304.44 radiation 1 1440 < th dose dependent rect. 9 2
152 306.19 wind 7 4320 < th dose independent rect. 17 1
154 306.25 humidity 60 14400 > th dose independent rect. 5 3
155 306.52 humidity 60 14400 > th dose independent rect. 7 1
156 306.63 wind 7 4320 > th dose independent rect. 14 5
157 306.76 wind 7 4320 > th dose independent rect. 17 1
159 306.90 wind 7 4320 < th dose independent rect. 14 4
167 307.77 radiation 1 1440 > th dose independent rect. 9 4
171 307.83 radiation 1 1440 > th dose independent rect. 9 1
192 308.55 radiation 1 1440 < th dose independent rect. 11 1
194 308.55 radiation 1 1440 < th dose dependent rect. 11 1
207 309.25 radiation 10 4320 < th dose dependent rect. 20 9
209 309.32 wind 5 4320 > th dose dependent rect. 18 1
216 309.65 radiation 1 1440 > th dose independent rect. 11 1
219 309.71 humidity 60 14400 > th dose independent rect. 20 8
225 309.91 wind 1 43200 < th dose independent rect. 6 4
247 310.75 radiation 1 1440 < th dose dependent rect. 8 8
248 310.76 humidity 80 4320 > th dose independent rect. 23 1
250 310.92 radiation 10 4320 < th dose dependent rect. 24 5
257 311.23 wind 5 4320 > th dose dependent rect. 13 6
259 311.31 wind 1 43200 < th dose dependent rect. 6 4
261 311.39 humidity 90 14400 < th dose dependent rect. 21 2
267 311.52 wind 1 43200 > th dose independent rect. 6 4
338 312.43 wind 9 4320 > th dose dependent rect. 16 1
347 312.61 wind 5 1440 > th dose dependent rect. 14 1
358 312.84 radiation 1 1440 < th dose independent rect. 13 1
359 312.84 radiation 1 1440 < th dose dependent rect. 13 1
380 313.24 humidity 60 14400 > th dose independent rect. 20 2
422 313.55 radiation 10 4320 < th dose independent rect. 17 13
447 313.77 radiation 1 1440 < th dose dependent rect. 15 1
467 314.15 wind 1 43200 < th dose independent rect. 4 10
473 314.25 wind 1 43200 < th dose independent rect. 5 7
481 314.39 humidity 50 14400 > th dose dependent rect. 6 1
495 314.52 humidity 80 14400 > th dose independent rect. 18 6
498 314.56 atmosphere 995 43200 < th dose independent rect. 10 16
513 314.65 atmosphere 995 43200 > th dose independent rect. 10 16
516 314.69 radiation 1 14400 < th dose dependent rect. 9 1
521 314.74 atmosphere 995 43200 > th dose independent rect. 9 18
524 314.76 atmosphere 995 43200 < th dose independent rect. 9 18
551 314.93 atmosphere 995 43200 > th dose independent rect. 23 20
572 314.95 humidity 50 14400 < th dose dependent rect. 9 1
575 314.97 atmosphere 995 43200 < th dose independent rect. 11 14
587 315.04 atmosphere 995 43200 > th dose independent rect. 8 20
599 315.11 atmosphere 995 43200 < th dose independent rect. 8 20
603 315.17 atmosphere 995 43200 < th dose independent sin 18 NA
610 315.19 wind 9 1440 < th dose dependent rect. 13 5
612 315.20 wind 7 4320 > th dose independent rect. 13 17
616 315.22 atmosphere 995 43200 > th dose independent rect. 11 14
620 315.24 atmosphere 995 43200 < th dose independent rect. 23 23
630 315.28 atmosphere 995 43200 < th dose independent rect. 23 20
632 315.28 atmosphere 995 43200 > th dose independent rect. 6 22
653 315.29 humidity 90 14400 < th dose dependent rect. 21 11
656 315.31 atmosphere 995 43200 > th dose independent rect. 4 22
662 315.33 wind 1 43200 > th dose independent rect. 5 6
681 315.39 wind 9 1440 < th dose dependent rect. 13 2
696 315.44 atmosphere 995 43200 < th dose independent rect. 7 22
702 315.47 atmosphere 995 43200 > th dose independent sin 18 NA
727 315.55 radiation 1 4320 < th dose independent rect. 20 9
729 315.55 humidity 50 14400 > th dose dependent rect. 21 2
731 315.56 wind 7 4320 < th dose independent rect. 13 17
765 315.71 atmosphere 995 43200 < th dose dependent rect. 13 12
771 315.76 atmosphere 995 43200 < th dose independent rect. 2 12
795 315.86 radiation 10 4320 < th dose dependent rect. 3 2
808 315.94 atmosphere 995 43200 < th dose independent no NA NA
815 315.95 atmosphere 995 43200 < th dose dependent rect. 22 17
835 316.00 atmosphere 995 43200 < th dose dependent rect. 23 15
836 316.00 atmosphere 995 43200 < th dose dependent rect. 10 18
855 316.04 atmosphere 995 43200 < th dose dependent rect. 10 22
863 316.06 wind 1 43200 > th dose independent rect. 6 1
874 316.11 wind 1 1440 < th dose independent rect. 6 1
892 316.18 humidity 80 14400 < th dose independent rect. 18 5
898 316.19 atmosphere 995 43200 < th dose dependent rect. 14 9
931 316.27 humidity 50 14400 < th dose independent rect. 9 1
958 316.31 atmosphere 995 43200 < th dose dependent sin 17 NA
963 316.33 atmosphere 995 43200 < th dose dependent sin 6 NA
964 316.33 temperature 15 14400 < th dose dependent rect. 4 1
966 316.34 humidity 50 14400 > th dose dependent rect. 4 4
970 316.35 atmosphere 995 43200 < th dose dependent rect. 11 16
972 316.36 atmosphere 995 43200 > th dose independent rect. 4 8
980 316.37 radiation 30 14400 < th dose dependent rect. 18 8
999 316.41 atmosphere 995 43200 > th dose independent rect. 2 12