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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0212300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.65 (0.0289) R2 : 0.0079
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.116 (0.0608) R2dN8 : 0.0102 R2N8 : 0.0079
σ : 0.544
deviance : 135.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.02 0.521 4.61 0.582 0.129 0.11 0.954 1.13 -0.0339 5.15 1014 6177 -- --
128.66 0.528 4.64 0.286 0.136 0.174 0.999 -- -0.101 5.21 1014 4486 -- --
125.29 0.521 4.61 0.582 0.132 0.106 -- 1.15 -0.0377 4.98 1015 6042 -- --
131.11 0.533 4.65 0.292 0.123 0.232 -- -- -0.114 4.83 1014 4160 -- --
126.25 0.523 4.62 0.59 -- 0.106 -- 1.15 -0.0338 -- 1015 6070 -- --
130.16 0.535 4.64 0.292 0.127 -- 1 -- -0.0816 5.31 -- -- -- --
132.66 0.539 4.64 0.293 0.134 -- -- -- -0.0863 4.94 -- -- -- --
131.91 0.535 4.65 0.298 -- 0.242 -- -- -0.114 -- 1014 4160 -- --
133.01 0.537 4.65 -- 0.144 0.184 -- -- -0.157 4.97 1014 13154 -- --
133.6 0.54 4.64 0.298 -- -- -- -- -0.0829 -- -- -- -- --
134.93 0.543 4.65 -- 0.139 -- -- -- -0.119 4.88 -- -- -- --
133.97 0.539 4.66 -- -- 0.188 -- -- -0.161 -- 1014 13863 -- --
135.95 0.544 4.65 -- -- -- -- -- -0.116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.73 wind 7.0 4320 > th dose independent rect. 23 3
2 121.87 wind 7.0 4320 > th dose dependent rect. 24 2
4 121.89 wind 7.0 4320 > th dose independent rect. 24 1
10 121.99 radiation 1.0 1440 < th dose dependent rect. 21 1
13 122.15 wind 7.0 4320 < th dose independent rect. 24 2
20 122.55 wind 3.0 4320 < th dose dependent rect. 10 3
22 122.62 temperature 20.0 90 > th dose dependent rect. 1 7
31 122.84 radiation 30.0 90 > th dose independent rect. 15 18
34 122.87 wind 5.0 1440 > th dose dependent rect. 24 8
39 122.95 humidity 80.0 4320 < th dose independent rect. 1 1
40 123.01 humidity 80.0 4320 > th dose independent rect. 1 1
47 123.09 humidity 80.0 4320 < th dose dependent rect. 1 1
51 123.17 wind 5.0 1440 > th dose independent rect. 24 6
52 123.17 temperature 20.0 10 > th dose dependent rect. 2 3
55 123.19 wind 7.0 1440 > th dose independent rect. 24 8
56 123.19 humidity 80.0 4320 < th dose dependent rect. 22 1
57 123.19 atmosphere 1010.0 4320 > th dose dependent rect. 11 1
63 123.24 wind 1.0 4320 < th dose independent rect. 9 5
65 123.26 precipitation 0.1 1440 > th dose independent rect. 20 7
67 123.26 precipitation 0.1 1440 > th dose dependent rect. 20 7
73 123.33 wind 1.0 4320 > th dose independent rect. 9 5
74 123.33 temperature 20.0 90 > th dose dependent rect. 2 2
84 123.35 wind 5.0 1440 < th dose independent rect. 24 6
94 123.38 humidity 80.0 4320 < th dose dependent rect. 22 5
103 123.45 atmosphere 1005.0 1440 < th dose independent rect. 21 8
110 123.47 atmosphere 1005.0 1440 < th dose independent rect. 22 6
118 123.50 atmosphere 1015.0 4320 > th dose independent rect. 11 1
119 123.50 atmosphere 1015.0 4320 < th dose independent rect. 11 1
147 123.57 humidity 50.0 4320 < th dose independent rect. 10 1
153 123.57 humidity 50.0 4320 < th dose dependent rect. 10 1
154 123.58 radiation 30.0 90 > th dose independent sin 12 NA
155 123.58 humidity 80.0 4320 < th dose independent rect. 23 4
164 123.61 atmosphere 1005.0 1440 > th dose independent rect. 21 8
186 123.64 atmosphere 1005.0 1440 > th dose independent rect. 22 6
222 123.69 atmosphere 1015.0 4320 > th dose independent rect. 14 6
244 123.75 atmosphere 1005.0 30 > th dose independent rect. 2 6
260 123.78 wind 1.0 720 < th dose dependent rect. 6 1
271 123.80 humidity 80.0 10 < th dose independent rect. 23 9
300 123.85 temperature 20.0 90 > th dose independent rect. 1 7
303 123.85 atmosphere 1015.0 4320 > th dose dependent rect. 13 7
304 123.86 humidity 80.0 720 > th dose independent rect. 21 2
318 123.89 atmosphere 1010.0 4320 > th dose dependent rect. 3 1
323 123.92 temperature 30.0 270 < th dose independent sin 4 NA
324 123.92 atmosphere 1005.0 1440 < th dose independent rect. 23 2
368 123.99 atmosphere 1015.0 43200 > th dose independent rect. 10 1
374 124.00 atmosphere 1015.0 43200 < th dose independent rect. 10 1
378 124.00 atmosphere 1005.0 720 < th dose independent rect. 21 20
392 124.02 atmosphere 1005.0 270 < th dose independent rect. 23 18
398 124.03 temperature 20.0 10 > th dose independent rect. 2 3
411 124.04 precipitation 0.1 4320 < th dose independent rect. 22 1
417 124.04 precipitation 0.1 4320 < th dose dependent rect. 22 1
418 124.05 temperature 30.0 270 > th dose independent rect. 8 7
435 124.05 humidity 60.0 14400 < th dose dependent rect. 12 1
444 124.07 temperature 30.0 270 > th dose independent sin 5 NA
454 124.08 atmosphere 1005.0 1440 < th dose independent rect. 3 1
458 124.08 atmosphere 1005.0 270 > th dose independent rect. 2 19
463 124.09 atmosphere 1005.0 1440 > th dose independent rect. 2 1
464 124.09 atmosphere 1015.0 14400 > th dose independent rect. 21 1
470 124.10 atmosphere 1015.0 14400 < th dose independent rect. 21 1
483 124.11 atmosphere 1005.0 270 < th dose independent rect. 12 5
486 124.11 atmosphere 1005.0 270 < th dose independent rect. 1 16
497 124.12 atmosphere 1015.0 4320 > th dose dependent rect. 14 1
499 124.12 temperature 30.0 90 > th dose dependent rect. 8 8
514 124.13 atmosphere 1005.0 1440 > th dose independent rect. 23 2
523 124.14 atmosphere 1015.0 4320 < th dose independent rect. 20 18
549 124.16 atmosphere 1015.0 4320 < th dose independent rect. 2 12
557 124.16 atmosphere 1015.0 4320 > th dose independent rect. 20 18
565 124.17 humidity 50.0 14400 > th dose independent rect. 12 1
568 124.17 atmosphere 1015.0 4320 < th dose independent rect. 17 3
602 124.18 atmosphere 1015.0 4320 > th dose independent rect. 2 12
605 124.18 atmosphere 1005.0 720 > th dose independent rect. 23 18
628 124.20 humidity 50.0 14400 < th dose independent rect. 13 1
648 124.20 atmosphere 1015.0 4320 < th dose independent rect. 2 20
660 124.21 humidity 80.0 10 < th dose independent rect. 5 3
721 124.23 atmosphere 1015.0 4320 < th dose independent sin 1 NA
728 124.23 atmosphere 1015.0 14400 > th dose independent rect. 21 4
732 124.23 atmosphere 1015.0 4320 < th dose independent rect. 15 5
750 124.23 atmosphere 1015.0 4320 < th dose independent rect. 10 19
767 124.23 atmosphere 1015.0 14400 > th dose dependent rect. 6 2
768 124.23 atmosphere 1015.0 14400 > th dose dependent rect. 5 4
791 124.24 atmosphere 1015.0 4320 < th dose independent rect. 10 13
798 124.24 atmosphere 1015.0 4320 < th dose independent rect. 5 18
812 124.24 atmosphere 1015.0 14400 > th dose dependent rect. 8 1
829 124.25 atmosphere 1015.0 4320 < th dose independent no NA NA
851 124.25 atmosphere 1015.0 4320 < th dose independent rect. 7 16
878 124.26 atmosphere 1015.0 4320 > th dose independent sin 3 NA
952 124.27 atmosphere 1015.0 14400 > th dose independent rect. 23 4
992 124.27 atmosphere 1015.0 4320 > th dose independent rect. 2 20
996 124.27 atmosphere 1005.0 720 < th dose independent rect. 12 20