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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0211400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.08 (0.0483) R2 : 0.597
β1 : -3.32 (0.178) R2dD : 0.328 R2D : 0.193
β2 : 0.674 (0.121) R2dC : 0.0266 R2C : -0.0294
β3 : 2.46 (0.149) R2dE : 0.247 R2E : 0.173
β4 : 2.72 (0.49) R2dD*C : 0.0242 R2D*C : -0.0176
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.12 (0.103) R2dN8 : 0.138 R2N8 : 0.0308
σ : 0.902
deviance : 375.05
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_____
C
peak time of C : 8.95
E
wheather : humidity
threshold : 99.04
memory length : 1051
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.2
open length of G : 5.25

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
374.14 0.909 5.08 -3.15 0.799 2.56 2.71 1.84 -1.1 10.2 100.8 977 15.6 5.65
375.05 0.902 5.08 -3.32 0.674 2.46 2.72 -- -1.12 8.95 99.04 1051 15.2 5.25
394.22 0.925 5.07 -3.25 1.45 3.3 -- -0.191 -1.12 12.5 110.3 923 16 5.55
393.38 0.924 5.1 -3.23 0.945 2.92 -- -- -1.13 12 105.7 988 16 4.74
446.31 0.984 5.16 -2.97 -- 3.18 -- -0.297 -1.24 -- 108.2 2457 16 6.28
531.44 1.08 5.08 -3.17 1.32 -- 1.25 -- -1.1 4.75 -- -- -- --
534.46 1.08 5.08 -3.18 1.33 -- -- -- -1.1 4.36 -- -- -- --
415.08 0.949 5.15 -3.13 -- 2.66 -- -- -1.21 -- 98.93 1046 15.6 6.97
651.33 1.19 5.06 -- 1.52 3.6 -- -- -0.788 14.5 103.9 900 17.2 5.65
629.56 1.17 5.09 -3.13 -- -- -- -- -1.07 -- -- -- -- --
801.42 1.32 5 -- 1.27 -- -- -- -0.749 4.42 -- -- -- --
532.69 1.07 5.1 -- -- 4.05 -- -- -1.14 -- 123.7 26942 15.8 5.95
888 1.39 5.01 -- -- -- -- -- -0.72 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 420.88 humidity 90 720 < th dose dependent rect. 17 7
2 421.18 temperature 30 720 < th dose independent rect. 16 10
3 421.39 temperature 30 720 < th dose independent rect. 15 12
7 423.43 humidity 70 720 > th dose independent rect. 16 5
8 423.59 humidity 70 720 > th dose independent rect. 16 10
15 425.19 humidity 90 720 < th dose dependent rect. 17 15
30 427.74 humidity 70 720 > th dose independent rect. 16 7
37 428.51 humidity 70 1440 < th dose independent sin 15 NA
42 428.72 humidity 80 1440 < th dose dependent sin 14 NA
46 429.22 humidity 70 1440 < th dose independent rect. 12 8
90 430.41 humidity 80 1440 < th dose dependent rect. 13 19
101 430.75 humidity 80 1440 < th dose dependent rect. 13 17
115 431.10 temperature 30 720 < th dose independent rect. 15 4
118 431.17 temperature 30 720 < th dose independent sin 13 NA
119 431.17 humidity 50 720 > th dose dependent rect. 16 7
121 431.27 temperature 30 720 < th dose independent rect. 15 16
125 431.34 temperature 30 720 < th dose independent rect. 17 2
138 431.53 humidity 70 1440 > th dose independent sin 16 NA
165 431.85 temperature 30 720 < th dose independent rect. 15 6
172 432.09 humidity 70 1440 > th dose independent rect. 11 18
178 432.16 humidity 70 1440 > th dose independent rect. 11 9
179 432.18 humidity 70 1440 > th dose independent rect. 11 14
191 432.29 humidity 50 720 > th dose dependent rect. 16 16
204 432.56 humidity 70 1440 < th dose independent rect. 15 5
248 432.93 humidity 60 720 > th dose dependent rect. 17 4
250 432.96 humidity 80 1440 < th dose dependent rect. 16 1
311 433.91 radiation 20 1440 > th dose dependent rect. 16 16
329 434.48 humidity 70 720 > th dose dependent rect. 19 2
339 434.76 radiation 20 1440 < th dose independent rect. 16 15
346 435.01 temperature 30 1440 > th dose dependent sin 13 NA
359 435.14 radiation 30 1440 > th dose independent rect. 14 3
374 435.14 temperature 30 1440 > th dose dependent rect. 14 5
394 435.26 temperature 30 1440 < th dose independent rect. 17 15
438 435.52 temperature 30 720 < th dose independent rect. 15 18
440 435.52 humidity 50 1440 > th dose dependent rect. 12 12
483 435.82 temperature 30 14400 > th dose dependent rect. 17 2
498 435.87 radiation 30 1440 > th dose dependent rect. 14 3
513 435.88 radiation 20 1440 > th dose dependent rect. 13 19
554 436.07 humidity 70 1440 > th dose independent rect. 15 14
560 436.12 radiation 20 1440 < th dose independent rect. 16 13
602 436.44 radiation 30 1440 < th dose independent rect. 14 2
682 436.76 radiation 30 1440 > th dose dependent sin 14 NA
700 436.78 radiation 30 1440 < th dose independent rect. 14 15
710 436.89 radiation 30 1440 < th dose independent rect. 14 4
720 436.98 humidity 50 1440 > th dose dependent sin 18 NA
721 437.00 radiation 40 1440 > th dose independent rect. 12 3
755 437.20 temperature 30 1440 > th dose independent rect. 16 3
785 437.29 radiation 30 1440 < th dose independent rect. 14 11
794 437.34 radiation 20 1440 < th dose independent rect. 16 2
833 437.38 humidity 60 14400 < th dose dependent rect. 16 2
878 437.61 radiation 20 1440 > th dose independent rect. 16 15
880 437.63 temperature 30 14400 < th dose independent rect. 18 1
916 437.83 radiation 20 1440 < th dose independent rect. 16 9
940 437.95 temperature 30 14400 < th dose independent rect. 18 11
951 438.05 temperature 30 1440 > th dose independent sin 12 NA
970 438.09 temperature 30 14400 < th dose independent rect. 18 13