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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0210500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alcohol dehydrogenase 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.23 (0.0889) R2 : 0.51
β1 : 0.808 (0.372) R2dD : 0.00745 R2D : 0.00532
β2 : 2.16 (0.226) R2dC : 0.106 R2C : 0.191
β3 : 7.43 (0.469) R2dE : 0.361 R2E : 0.336
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.35 (1.69) R2dD*E : 0.0419 R2D*E : -0.059
γ1 : -0.258 (0.192) R2dN8 : 0.00275 R2N8 : 0.0111
σ : 1.61
deviance : 1189.73
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C
peak time of C : 20
E
wheather : radiation
threshold : 1.643
memory length : 1550
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.96
open length of G : 21.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1189.24 1.62 6.24 0.921 2.19 7.37 1.11 8.06 -0.238 20.2 1.488 1540 9 21.2
1216.84 1.62 6.2 1.63 2.21 6.81 1.46 -- -0.149 19.6 2.304 1576 8.73 21.4
1189.73 1.61 6.23 0.808 2.16 7.43 -- 8.35 -0.258 20 1.643 1550 8.96 21.2
1230.25 1.63 6.2 1.52 2.3 6.6 -- -- -0.194 19.6 2.367 1579 8.87 21.3
1424.26 1.76 6.14 0.815 -- 8.11 -- 7.44 -0.213 -- 1.641 1548 9.87 19.9
1605 1.88 6.34 0.743 3.48 -- 1.44 -- -0.853 22.2 -- -- -- --
1613.2 1.88 6.34 0.684 3.47 -- -- -- -0.857 22.3 -- -- -- --
1466.28 1.78 6.08 1.47 -- 7.18 -- -- -0.0946 -- 2.298 1558 10.6 19.3
1275.78 1.66 6.2 -- 2.28 6.06 -- -- -0.35 19.4 2.976 1591 9.17 20.8
2346.39 2.26 6.25 0.736 -- -- -- -- -0.849 -- -- -- -- --
1625.55 1.89 6.36 -- 3.48 -- -- -- -0.933 22.3 -- -- -- --
1511.41 1.81 6.06 -- -- 6.89 -- -- -0.246 -- 2.988 1565 10.5 19.2
2360.69 2.27 6.27 -- -- -- -- -- -0.93 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1191.05 humidity 80 43200 > th dose dependent rect. 10 19
3 1192.12 humidity 80 43200 > th dose dependent rect. 11 17
7 1193.00 humidity 90 43200 > th dose dependent rect. 20 4
9 1193.49 humidity 90 43200 > th dose dependent rect. 23 1
13 1194.20 humidity 80 43200 > th dose dependent rect. 18 7
14 1194.25 humidity 90 43200 < th dose independent rect. 18 11
19 1195.12 humidity 90 43200 < th dose independent rect. 19 9
20 1195.17 humidity 80 43200 > th dose dependent sin 15 NA
31 1197.29 humidity 90 43200 > th dose dependent rect. 20 1
56 1199.63 humidity 90 43200 > th dose independent rect. 18 11
62 1200.04 humidity 90 43200 < th dose independent rect. 14 15
70 1200.90 humidity 80 43200 > th dose dependent rect. 18 21
75 1201.27 humidity 80 43200 > th dose independent rect. 13 1
124 1203.61 humidity 90 43200 < th dose independent sin 12 NA
134 1204.01 humidity 90 43200 > th dose independent rect. 14 15
164 1204.84 humidity 80 43200 > th dose dependent no NA NA
262 1209.06 humidity 90 43200 > th dose independent sin 13 NA
292 1210.02 humidity 80 43200 > th dose dependent rect. 2 23
304 1210.41 humidity 90 43200 > th dose independent rect. 21 1
340 1212.19 humidity 80 43200 < th dose independent rect. 13 1
348 1212.34 radiation 1 43200 < th dose independent rect. 9 1
353 1212.48 radiation 1 43200 > th dose independent rect. 9 1
365 1212.73 radiation 1 43200 < th dose dependent rect. 7 7
418 1214.72 radiation 1 43200 < th dose dependent rect. 6 5
461 1215.90 temperature 25 14400 > th dose dependent rect. 11 1
464 1215.93 radiation 1 43200 < th dose independent rect. 7 7
467 1216.06 radiation 1 43200 > th dose independent rect. 7 7
473 1216.30 radiation 1 43200 < th dose independent rect. 8 5
480 1216.53 radiation 1 43200 > th dose independent rect. 8 5
486 1216.72 temperature 20 14400 > th dose dependent rect. 4 1
537 1218.30 radiation 1 43200 < th dose independent rect. 9 3
539 1218.34 radiation 1 43200 > th dose independent rect. 9 3
562 1218.93 humidity 90 43200 < th dose independent rect. 21 1
592 1219.66 radiation 20 14400 > th dose dependent rect. 16 15
634 1220.72 radiation 40 14400 < th dose dependent rect. 18 6
638 1220.80 radiation 20 14400 > th dose dependent rect. 16 1
663 1221.12 radiation 40 14400 < th dose dependent rect. 18 4
718 1222.41 humidity 90 43200 < th dose independent rect. 20 19
751 1223.10 humidity 80 43200 > th dose dependent sin 5 NA
789 1223.80 temperature 20 43200 > th dose independent rect. 4 1
805 1224.11 temperature 20 43200 < th dose independent rect. 4 1
822 1224.48 radiation 10 43200 < th dose dependent rect. 4 1
833 1224.61 temperature 25 14400 > th dose independent rect. 18 7
839 1224.77 temperature 25 14400 > th dose dependent rect. 22 16
843 1224.82 temperature 25 14400 > th dose dependent rect. 20 19
853 1224.98 humidity 90 43200 > th dose independent rect. 1 7
866 1225.09 radiation 10 43200 < th dose dependent rect. 19 10
885 1225.27 temperature 25 14400 > th dose dependent rect. 17 22
915 1225.71 temperature 25 14400 > th dose dependent rect. 9 19
934 1225.86 humidity 80 43200 > th dose independent rect. 3 15
952 1226.00 temperature 25 14400 > th dose independent rect. 19 2