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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0210300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alcohol dehydrogenase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0331) R2 : 0.567
β1 : -0.767 (0.122) R2dD : 0.0376 R2D : 0.0206
β2 : 1.23 (0.0832) R2dC : 0.222 R2C : 0.317
β3 : 1.96 (0.153) R2dE : 0.161 R2E : 0.271
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.77 (0.539) R2dD*E : 0.0488 R2D*E : 0.0527
γ1 : -0.107 (0.0707) R2dN8 : 0.00353 R2N8 : -0.00202
σ : 0.62
deviance : 176.99
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_____
C
peak time of C : 1.95
E
wheather : humidity
threshold : 63.51
memory length : 256
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.1
open length of G : 0.894

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.27 0.608 12.4 -0.842 1.18 1.91 -1.84 4.57 -0.114 2.23 62.17 264 19.1 0.8
192.7 0.647 12.3 -0.753 1.18 2.27 -1.22 -- -0.124 2.77 64.76 253 19.4 0.623
176.99 0.62 12.4 -0.767 1.23 1.96 -- 3.77 -0.107 1.95 63.51 256 19.1 0.894
195.29 0.651 12.3 -0.692 1.24 2.1 -- -- -0.0708 1.92 67.35 252 19.3 0.651
252.79 0.741 12.3 -0.726 -- 2.5 -- 3.62 -0.0452 -- 64.41 267 19.1 0.918
244.47 0.733 12.4 -0.675 1.57 -- -0.0477 -- -0.102 0.51 -- -- -- --
244.48 0.732 12.4 -0.673 1.57 -- -- -- -0.101 0.5 -- -- -- --
198.57 0.656 12.3 -0.541 -- 1.98 -- -- 0.113 -- 60.23 609 19.7 0.234
208.07 0.672 12.3 -- 1.22 2.08 -- -- -0.0369 1.81 67.9 250 19.3 0.698
399.04 0.933 12.4 -0.618 -- -- -- -- -0.075 -- -- -- -- --
256.4 0.749 12.4 -- 1.56 -- -- -- -0.0263 0.478 -- -- -- --
209.48 0.674 12.3 -- -- 2.06 -- -- 0.119 -- 59.96 606 19.8 0.133
409.13 0.944 12.3 -- -- -- -- -- -0.00637 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.51 humidity 60.0 270 > th dose dependent rect. 19 1
4 173.61 humidity 80.0 270 > th dose independent rect. 19 1
6 175.03 humidity 70.0 90 > th dose dependent rect. 18 5
9 176.44 humidity 80.0 90 > th dose independent rect. 18 5
16 180.58 temperature 30.0 270 < th dose dependent rect. 19 1
26 182.82 humidity 80.0 10 > th dose independent rect. 19 4
27 182.92 wind 7.0 270 < th dose dependent rect. 19 1
42 184.87 temperature 30.0 90 < th dose dependent rect. 18 5
50 185.50 temperature 25.0 270 < th dose independent rect. 19 1
57 186.06 atmosphere 1000.0 270 > th dose independent rect. 19 1
67 186.55 radiation 1.0 720 < th dose dependent rect. 12 9
83 187.42 temperature 15.0 270 > th dose independent rect. 20 23
89 187.97 radiation 1.0 270 < th dose dependent rect. 17 3
92 188.03 wind 5.0 270 < th dose independent rect. 19 1
97 188.19 atmosphere 995.0 270 > th dose dependent rect. 19 1
99 188.25 radiation 1.0 720 < th dose independent rect. 13 8
128 189.28 precipitation 0.1 270 < th dose independent rect. 20 23
129 189.28 precipitation 0.1 270 < th dose dependent rect. 20 23
137 189.76 temperature 25.0 90 < th dose independent rect. 18 5
138 189.77 atmosphere 1000.0 90 > th dose independent rect. 19 4
142 190.26 radiation 1.0 720 < th dose independent rect. 17 4
149 190.41 temperature 10.0 270 > th dose independent rect. 19 1
153 190.41 atmosphere 1015.0 270 < th dose independent rect. 19 1
154 190.41 radiation 1.0 270 < th dose independent rect. 19 1
160 190.41 radiation 1.0 270 < th dose dependent rect. 19 1
167 190.43 wind 9.0 270 < th dose independent rect. 19 1
176 190.89 wind 9.0 270 < th dose independent rect. 20 23
183 191.21 temperature 30.0 720 < th dose independent rect. 17 12
188 191.38 humidity 70.0 720 > th dose independent rect. 18 11
211 192.35 wind 1.0 270 > th dose independent rect. 19 1
224 192.59 wind 7.0 90 < th dose dependent rect. 18 5
226 192.62 temperature 15.0 1440 > th dose independent rect. 20 3
243 193.17 humidity 70.0 4320 > th dose independent rect. 20 4
259 193.54 atmosphere 995.0 90 > th dose dependent rect. 19 4
263 193.55 temperature 30.0 1440 < th dose independent rect. 20 4
267 193.55 humidity 50.0 1440 > th dose independent rect. 20 4
273 193.55 atmosphere 995.0 1440 > th dose independent rect. 20 4
274 193.55 radiation 1.0 1440 < th dose independent rect. 20 4
294 193.55 temperature 10.0 1440 > th dose independent rect. 24 20
300 193.58 radiation 40.0 14400 < th dose dependent rect. 20 4
304 193.59 radiation 40.0 1440 < th dose dependent rect. 20 4
315 193.72 precipitation 0.1 90 < th dose independent rect. 23 20
316 193.72 precipitation 0.1 90 < th dose dependent rect. 23 20
325 193.86 temperature 15.0 90 > th dose independent rect. 23 20
343 194.22 radiation 1.0 720 < th dose independent rect. 14 15
353 194.48 radiation 10.0 720 < th dose dependent rect. 16 14
357 194.59 temperature 30.0 720 < th dose independent rect. 18 10
360 194.67 radiation 1.0 720 < th dose independent sin 15 NA
367 194.83 humidity 70.0 720 > th dose independent rect. 17 13
370 194.87 wind 5.0 90 < th dose independent rect. 19 4
373 194.88 radiation 40.0 720 < th dose dependent rect. 15 15
387 195.19 radiation 1.0 720 < th dose dependent sin 20 NA
401 195.55 temperature 10.0 90 > th dose independent rect. 19 4
403 195.55 humidity 50.0 90 > th dose independent rect. 19 4
406 195.55 radiation 1.0 90 < th dose independent rect. 19 4
412 195.55 radiation 1.0 90 < th dose dependent rect. 19 4
420 195.60 wind 9.0 90 < th dose independent rect. 19 4
456 196.13 wind 9.0 90 < th dose independent rect. 23 20
569 197.30 radiation 1.0 720 < th dose independent rect. 17 10
590 197.57 atmosphere 1015.0 90 < th dose independent rect. 23 20
646 198.51 atmosphere 1010.0 90 < th dose independent rect. 19 4
740 199.44 radiation 1.0 720 < th dose dependent rect. 18 9
744 199.54 humidity 60.0 10 > th dose dependent rect. 19 13
761 199.76 temperature 10.0 270 > th dose dependent rect. 20 10
788 200.00 radiation 10.0 720 < th dose dependent rect. 16 11
914 201.11 wind 3.0 10 < th dose independent rect. 19 4
919 201.16 atmosphere 995.0 90 > th dose independent rect. 23 20