Os11g0209000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycine rich family protein.
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Os11g0209000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycine rich family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.35 | 0.468 | 14.8 | 0.141 | 0.87 | -1.87 | 0.211 | -1.33 | 0.196 | 11.6 | 1.007 | 1468 | -- | -- |
| 98.8 | 0.463 | 14.8 | 0.0796 | 0.855 | -1.57 | 0.381 | -- | 0.159 | 11.4 | 2.043 | 1499 | -- | -- |
| 97.43 | 0.46 | 14.8 | 0.167 | 0.599 | -2.26 | -- | -2.16 | 0.196 | 11.1 | 0.6156 | 1533 | -- | -- |
| 97.19 | 0.459 | 14.8 | 0.0606 | 0.595 | -1.86 | -- | -- | 0.129 | 10.9 | 2.017 | 1545 | -- | -- |
| 109.32 | 0.487 | 14.8 | 0.0413 | -- | -2.73 | -- | -1.75 | 0.132 | -- | 0.9994 | 1579 | -- | -- |
| 126.52 | 0.527 | 14.8 | 0.378 | 1 | -- | 0.149 | -- | 0.375 | 11.6 | -- | -- | -- | -- |
| 126.61 | 0.527 | 14.8 | 0.385 | 0.999 | -- | -- | -- | 0.376 | 11.7 | -- | -- | -- | -- |
| 109.31 | 0.487 | 14.9 | -0.015 | -- | -2.42 | -- | -- | 0.104 | -- | 1.997 | 1594 | -- | -- |
| 97.21 | 0.459 | 14.9 | -- | 0.577 | -1.89 | -- | -- | 0.13 | 10.9 | 1.94 | 1548 | -- | -- |
| 189.4 | 0.643 | 14.8 | 0.356 | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
| 130.52 | 0.534 | 14.8 | -- | 0.995 | -- | -- | -- | 0.333 | 11.6 | -- | -- | -- | -- |
| 109.32 | 0.487 | 14.9 | -- | -- | -2.42 | -- | -- | 0.105 | -- | 2 | 1594 | -- | -- |
| 192.75 | 0.648 | 14.8 | -- | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 8 | 95.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 9 | 95.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 10 | 96.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 11 | 96.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 14 | 96.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 43 | 97.00 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 52 | 97.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 55 | 97.30 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 21 |
| 69 | 97.44 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 71 | 97.47 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 73 | 97.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 79 | 97.55 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 81 | 97.57 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 91 | 97.64 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 100 | 97.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 101 | 97.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 104 | 97.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 114 | 97.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 124 | 97.99 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 132 | 98.05 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 171 | 98.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 240 | 98.94 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 306 | 99.43 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 3 |
| 310 | 99.47 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 311 | 99.48 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 316 | 99.53 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 353 | 99.73 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 21 |
| 452 | 100.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 481 | 100.59 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 23 |
| 557 | 101.00 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 568 | 101.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 591 | 101.14 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 672 | 101.40 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 681 | 101.49 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 690 | 101.58 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 716 | 101.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 720 | 101.76 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 745 | 101.89 | humidity | 60 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 771 | 102.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 799 | 102.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 813 | 102.19 | humidity | 50 | 720 | > th | dose dependent | sin | 13 | NA |
| 822 | 102.22 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 907 | 102.52 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 925 | 102.54 | humidity | 90 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 945 | 102.68 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 992 | 102.68 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 994 | 102.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 12 |