FiT-DB / Search/ Help/ Sample detail

Os11g0208900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat containing protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0252) R2 : 0.86
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.02 (0.0699) R2dC : 0.302 R2C : 0.53
β3 : 1.5 (0.0495) R2dE : 0.33 R2E : 0.557
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0577 (0.053) R2dN8 : 0.000593 R2N8 : -0.00161
σ : 0.473
deviance : 103.04
__
_____
C
peak time of C : 7.52
E
wheather : radiation
threshold : 0.55
memory length : 51
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.95 0.453 10.9 0.529 2 1.54 0.785 -0.626 0.114 7.46 0.5995 52 -- --
94.89 0.454 10.9 0.552 2.02 1.53 0.329 -- 0.115 7.47 0.6104 52 -- --
94.13 0.452 10.9 0.54 2.01 1.52 -- -0.367 0.119 7.49 0.5592 51 -- --
94.94 0.454 10.9 0.55 2.03 1.49 -- -- 0.117 7.56 0.56 51 -- --
251.65 0.743 11 0.537 -- 2.05 -- -0.485 0.139 -- 0.7974 50 -- --
139.23 0.553 10.9 0.653 3.15 -- -0.337 -- 0.162 9.62 -- -- -- --
139.65 0.553 10.9 0.641 3.15 -- -- -- 0.162 9.62 -- -- -- --
253.18 0.744 11 0.544 -- 2.05 -- -- 0.142 -- 0.7916 49 -- --
103.04 0.473 10.9 -- 2.02 1.5 -- -- 0.0577 7.52 0.55 51 -- --
727.32 1.26 11 0.615 -- -- -- -- 0.168 -- -- -- -- --
150.47 0.574 10.9 -- 3.15 -- -- -- 0.0904 9.6 -- -- -- --
260.98 0.755 11 -- -- 2.06 -- -- 0.0812 -- 0.7916 49 -- --
737.3 1.27 11 -- -- -- -- -- 0.0998 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.87 radiation 1.0 30 < th dose dependent rect. 17 13
17 93.38 radiation 1.0 30 < th dose independent rect. 16 14
82 96.23 radiation 1.0 30 < th dose dependent rect. 7 23
97 96.46 radiation 1.0 30 < th dose dependent no NA NA
110 96.55 radiation 20.0 270 < th dose independent rect. 20 11
111 96.55 wind 9.0 270 < th dose independent rect. 7 13
112 96.57 humidity 70.0 270 > th dose independent rect. 20 11
114 96.76 temperature 10.0 270 > th dose independent rect. 20 11
115 96.76 temperature 30.0 270 < th dose independent rect. 20 11
116 96.76 humidity 50.0 270 > th dose independent rect. 20 11
118 96.76 atmosphere 995.0 270 > th dose independent rect. 20 11
120 96.76 temperature 10.0 270 > th dose independent rect. 7 13
121 96.76 atmosphere 1015.0 270 < th dose independent rect. 7 13
122 96.87 wind 9.0 270 < th dose independent rect. 20 11
131 97.00 precipitation 0.1 270 < th dose independent rect. 20 11
136 97.00 precipitation 0.1 270 < th dose dependent rect. 20 11
179 97.94 wind 9.0 720 < th dose independent rect. 19 13
183 98.12 radiation 30.0 270 < th dose independent rect. 15 12
184 98.16 radiation 40.0 720 < th dose independent rect. 19 13
206 98.50 radiation 1.0 30 > th dose independent no NA NA
207 98.50 radiation 1.0 30 < th dose independent no NA NA
208 98.50 radiation 1.0 30 > th dose independent rect. 5 14
272 98.55 temperature 10.0 720 > th dose independent rect. 8 11
273 98.55 atmosphere 1015.0 720 < th dose independent rect. 8 11
274 98.55 temperature 10.0 720 > th dose independent rect. 19 13
275 98.55 temperature 30.0 720 < th dose independent rect. 19 13
276 98.55 humidity 50.0 720 > th dose independent rect. 19 13
277 98.55 atmosphere 995.0 720 > th dose independent rect. 19 13
281 98.72 radiation 40.0 720 < th dose dependent rect. 16 3
301 99.23 radiation 1.0 30 < th dose independent sin 14 NA
309 99.42 radiation 20.0 720 < th dose independent rect. 16 3
310 99.45 radiation 40.0 270 < th dose dependent rect. 20 11
315 99.67 temperature 10.0 30 > th dose dependent rect. 5 13
318 99.74 radiation 20.0 720 < th dose dependent rect. 17 2
330 99.91 radiation 10.0 30 < th dose dependent sin 13 NA
333 99.95 precipitation 0.1 270 < th dose independent rect. 7 13
334 99.95 precipitation 0.1 270 < th dose dependent rect. 7 13
349 100.24 atmosphere 995.0 270 > th dose independent rect. 7 13
359 100.27 radiation 1.0 30 > th dose independent sin 14 NA
360 100.30 precipitation 0.1 720 < th dose independent rect. 19 13
361 100.30 precipitation 0.1 720 < th dose dependent rect. 19 13
380 100.70 temperature 30.0 10 < th dose independent rect. 18 11
381 100.71 humidity 60.0 30 > th dose independent rect. 18 11
417 101.20 precipitation 0.1 90 < th dose independent rect. 5 13
418 101.20 precipitation 0.1 90 < th dose dependent rect. 5 13
428 101.27 radiation 1.0 90 < th dose independent rect. 5 23
450 101.50 humidity 50.0 720 > th dose independent rect. 17 2
478 101.78 radiation 1.0 90 > th dose independent rect. 11 22
492 102.18 wind 9.0 720 < th dose independent rect. 8 11
494 102.19 radiation 20.0 720 < th dose independent rect. 4 3
510 102.31 wind 7.0 720 < th dose independent rect. 4 3
511 102.32 humidity 70.0 720 > th dose independent rect. 4 3
518 102.35 precipitation 0.1 720 < th dose independent rect. 4 3
526 102.35 precipitation 0.1 720 < th dose dependent rect. 4 3
554 102.61 temperature 10.0 720 > th dose independent rect. 4 3
555 102.61 temperature 30.0 720 < th dose independent rect. 4 3
556 102.61 humidity 50.0 720 > th dose independent rect. 4 3
558 102.61 atmosphere 995.0 720 > th dose independent rect. 4 3
559 102.61 atmosphere 1015.0 720 < th dose independent rect. 4 3
562 102.61 temperature 10.0 720 > th dose independent rect. 7 21
570 102.66 radiation 1.0 30 > th dose independent rect. 13 18
640 103.19 temperature 10.0 720 > th dose independent rect. 16 3
641 103.19 atmosphere 1015.0 720 < th dose independent rect. 16 3
643 103.19 temperature 10.0 720 > th dose independent rect. 19 21
722 103.40 atmosphere 995.0 30 > th dose independent rect. 18 11
727 103.43 precipitation 0.1 270 < th dose independent rect. 3 13
728 103.43 precipitation 0.1 270 < th dose dependent rect. 3 13
730 103.45 wind 9.0 30 < th dose independent rect. 18 11
731 103.46 temperature 10.0 30 > th dose independent rect. 18 11
736 103.46 temperature 10.0 30 > th dose independent rect. 5 13
738 103.46 atmosphere 1015.0 30 < th dose independent rect. 5 13
741 103.49 wind 9.0 720 < th dose independent rect. 16 3
771 103.65 temperature 10.0 30 > th dose dependent rect. 18 11
812 104.25 wind 9.0 720 < th dose independent rect. 7 4
813 104.25 precipitation 0.1 720 < th dose independent rect. 8 11
814 104.25 precipitation 0.1 720 < th dose dependent rect. 8 11
823 104.41 precipitation 0.1 720 < th dose independent rect. 7 4
825 104.41 precipitation 0.1 720 < th dose dependent rect. 7 4
829 104.46 temperature 10.0 720 > th dose independent rect. 7 4
830 104.46 atmosphere 995.0 720 > th dose independent rect. 7 4
831 104.46 atmosphere 1015.0 720 < th dose independent rect. 7 4
833 104.46 temperature 10.0 720 > th dose independent rect. 11 20
835 104.53 wind 9.0 720 < th dose independent rect. 19 4
866 104.75 precipitation 0.1 720 < th dose independent rect. 19 21
867 104.75 precipitation 0.1 720 < th dose dependent rect. 19 21
870 104.78 wind 9.0 30 < th dose independent rect. 5 13
899 104.98 temperature 10.0 720 > th dose independent rect. 19 4
900 104.98 temperature 30.0 720 < th dose independent rect. 19 4
901 104.98 humidity 50.0 720 > th dose independent rect. 19 4
902 104.98 atmosphere 995.0 720 > th dose independent rect. 19 4
903 104.98 radiation 1.0 720 < th dose independent rect. 19 4
908 104.98 temperature 10.0 720 > th dose independent rect. 23 20
909 104.98 radiation 1.0 720 < th dose dependent rect. 19 4
927 105.13 wind 9.0 270 < th dose independent rect. 16 11
938 105.24 precipitation 0.1 30 < th dose independent rect. 18 11
939 105.24 precipitation 0.1 30 < th dose dependent rect. 18 11
952 105.35 temperature 10.0 720 > th dose dependent rect. 5 2
955 105.39 temperature 10.0 270 > th dose independent rect. 16 11
958 105.39 temperature 10.0 270 > th dose independent rect. 3 13
959 105.39 atmosphere 1015.0 270 < th dose independent rect. 3 13
965 105.46 wind 9.0 720 < th dose independent rect. 7 6
970 105.55 humidity 60.0 90 > th dose independent rect. 18 1
990 105.64 radiation 1.0 30 < th dose dependent rect. 23 23
992 105.66 precipitation 0.1 720 < th dose independent rect. 7 6
993 105.66 precipitation 0.1 720 < th dose dependent rect. 7 6
995 105.67 wind 1.0 720 > th dose independent rect. 16 3
997 105.68 radiation 1.0 90 < th dose independent rect. 17 3