Os11g0206700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Guanine nucleotide binding protein (G-protein), alpha subunit family protein.
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Os11g0206700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Guanine nucleotide binding protein (G-protein), alpha subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.75 | 0.161 | 11.6 | 0.543 | 0.18 | -0.495 | -0.313 | 0.463 | 0.266 | 19.4 | 18.89 | 358 | -- | -- |
| 11.87 | 0.16 | 11.6 | 0.469 | 0.182 | -0.493 | -0.234 | -- | 0.25 | 19.7 | 18.11 | 403 | -- | -- |
| 11.98 | 0.161 | 11.6 | 0.538 | 0.181 | -0.507 | -- | 0.343 | 0.269 | 19.4 | 18.54 | 368 | -- | -- |
| 11.99 | 0.161 | 11.6 | 0.471 | 0.181 | -0.499 | -- | -- | 0.243 | 19.7 | 17.9 | 393 | -- | -- |
| 13.16 | 0.169 | 11.6 | 0.47 | -- | -0.398 | -- | 0.196 | 0.228 | -- | 17.9 | 167 | -- | -- |
| 15.69 | 0.186 | 11.6 | 0.341 | 0.0879 | -- | -0.162 | -- | 0.158 | 23.1 | -- | -- | -- | -- |
| 15.77 | 0.186 | 11.6 | 0.347 | 0.0909 | -- | -- | -- | 0.158 | 0.146 | -- | -- | -- | -- |
| 13.19 | 0.169 | 11.6 | 0.436 | -- | -0.387 | -- | -- | 0.22 | -- | 17.9 | 167 | -- | -- |
| 17.11 | 0.193 | 11.6 | -- | 0.137 | -0.294 | -- | -- | 0.162 | 21.1 | 21.12 | 432 | -- | -- |
| 16.29 | 0.189 | 11.6 | 0.35 | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
| 18.95 | 0.204 | 11.6 | -- | 0.0958 | -- | -- | -- | 0.119 | 0.345 | -- | -- | -- | -- |
| 17.81 | 0.197 | 11.6 | -- | -- | -0.271 | -- | -- | 0.16 | -- | 18.9 | 61 | -- | -- |
| 19.52 | 0.206 | 11.6 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.65 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 2 | 11.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 3 | 11.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 11 | 11.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 25 | 11.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 22 |
| 41 | 11.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 62 | 11.90 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 99 | 11.95 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 9 |
| 109 | 11.96 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 111 | 11.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 137 | 12.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 140 | 12.02 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 149 | 12.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 160 | 12.04 | radiation | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 166 | 12.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 204 | 12.06 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 223 | 12.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 232 | 12.08 | temperature | 25 | 1440 | < th | dose independent | sin | 14 | NA |
| 241 | 12.08 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 242 | 12.08 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 300 | 12.10 | temperature | 25 | 1440 | > th | dose independent | sin | 14 | NA |
| 301 | 12.10 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 302 | 12.10 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 423 | 12.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 431 | 12.14 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 11 |
| 445 | 12.14 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 447 | 12.14 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 22 |
| 492 | 12.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 19 |
| 524 | 12.16 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 525 | 12.16 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 530 | 12.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 532 | 12.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 665 | 12.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 671 | 12.17 | humidity | 90 | 43200 | < th | dose independent | sin | 20 | NA |
| 674 | 12.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 677 | 12.17 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 12 |
| 683 | 12.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 16 |
| 686 | 12.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 17 |
| 749 | 12.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 17 |
| 790 | 12.19 | humidity | 90 | 43200 | > th | dose independent | sin | 20 | NA |
| 792 | 12.19 | humidity | 90 | 43200 | < th | dose independent | sin | 1 | NA |
| 848 | 12.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 12 |
| 866 | 12.20 | humidity | 90 | 43200 | > th | dose independent | sin | 0 | NA |
| 909 | 12.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 16 |
| 947 | 12.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |