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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0206100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0173) R2 : 0.00505
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0553 (0.0363) R2dN8 : 0.00652 R2N8 : 0.00505
σ : 0.325
deviance : 48.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.76 0.314 2.93 0.0355 0.485 0.419 1.39 1.25 0.0754 13.4 1.46 129 -- --
45.82 0.315 2.93 0.0903 0.519 0.458 -0.0109 -- 0.0844 13.4 1.45 157 -- --
46.16 0.316 2.94 0.0938 0.465 0.431 -- 0.258 0.0929 12.9 1.45 155 -- --
45.8 0.315 2.93 0.0859 0.541 0.471 -- -- 0.0812 13.5 1.455 164 -- --
47.9 0.322 2.94 0.0801 -- 0.0142 -- 0.404 0.0598 -- 18.71 211 -- --
48.04 0.325 2.94 0.0785 0.0434 -- 0.291 -- 0.0634 19.8 -- -- -- --
48.28 0.325 2.94 0.0706 0.0435 -- -- -- 0.0635 20.5 -- -- -- --
48.22 0.325 2.94 0.0649 -- -0.0464 -- -- 0.0618 -- 21.46 293 -- --
46.03 0.316 2.93 -- 0.542 0.471 -- -- 0.0737 13.5 1.46 164 -- --
48.38 0.325 2.94 0.0704 -- -- -- -- 0.0631 -- -- -- -- --
48.41 0.325 2.94 -- 0.0433 -- -- -- 0.0557 20.7 -- -- -- --
48.06 0.323 2.94 -- -- 0.0699 -- -- 0.0584 -- 1.451 115 -- --
48.51 0.325 2.94 -- -- -- -- -- 0.0553 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.98 humidity 90.0 90 > th dose dependent rect. 16 3
4 42.18 precipitation 0.1 30 < th dose independent rect. 21 23
5 42.18 precipitation 0.1 30 < th dose dependent rect. 21 23
6 42.25 precipitation 0.1 90 > th dose independent rect. 16 3
7 42.28 humidity 90.0 10 > th dose independent rect. 17 1
18 42.28 humidity 90.0 10 > th dose dependent rect. 17 1
28 42.42 radiation 1.0 90 < th dose dependent rect. 16 1
30 42.60 wind 5.0 30 < th dose dependent rect. 20 1
31 42.62 humidity 80.0 30 > th dose dependent rect. 20 1
34 42.66 atmosphere 1005.0 10 > th dose independent rect. 20 1
38 42.67 atmosphere 1005.0 10 > th dose dependent rect. 20 1
43 42.69 humidity 80.0 10 > th dose independent rect. 20 1
56 42.73 radiation 10.0 1440 < th dose dependent rect. 21 1
57 42.73 precipitation 0.1 90 > th dose dependent rect. 15 4
65 42.76 temperature 20.0 30 > th dose independent rect. 20 1
68 42.77 wind 5.0 30 < th dose independent rect. 20 1
70 42.77 temperature 10.0 1440 > th dose independent rect. 21 1
74 42.77 temperature 30.0 1440 < th dose independent rect. 21 1
78 42.77 humidity 50.0 1440 > th dose independent rect. 21 1
84 42.77 atmosphere 995.0 1440 > th dose independent rect. 21 1
85 42.77 radiation 1.0 1440 < th dose independent rect. 21 1
105 42.77 temperature 10.0 1440 > th dose independent rect. 22 23
121 42.80 wind 1.0 30 > th dose independent rect. 20 1
123 42.80 temperature 10.0 30 > th dose independent rect. 20 1
125 42.80 temperature 30.0 30 < th dose independent rect. 20 1
126 42.80 humidity 50.0 30 > th dose independent rect. 20 1
130 42.80 atmosphere 1010.0 30 < th dose independent rect. 20 1
132 42.80 radiation 1.0 30 < th dose independent rect. 20 1
137 42.80 precipitation 0.1 30 < th dose independent rect. 20 1
138 42.80 temperature 10.0 30 > th dose independent rect. 21 23
140 42.80 temperature 30.0 30 < th dose dependent rect. 20 1
141 42.80 radiation 1.0 30 < th dose dependent rect. 20 1
146 42.80 precipitation 0.1 30 < th dose dependent rect. 20 1
149 42.81 temperature 10.0 30 > th dose dependent rect. 20 1
155 42.83 humidity 90.0 30 < th dose independent rect. 20 1
157 42.84 wind 1.0 270 < th dose independent rect. 17 1
158 42.84 wind 1.0 270 < th dose dependent rect. 17 1
171 42.91 wind 9.0 30 < th dose independent rect. 21 23
175 42.93 radiation 1.0 90 < th dose independent rect. 16 1
177 42.94 atmosphere 1015.0 30 < th dose dependent rect. 20 1
179 42.95 wind 1.0 30 > th dose dependent rect. 20 1
180 42.96 humidity 80.0 90 > th dose independent rect. 16 5
193 43.00 humidity 90.0 90 > th dose independent rect. 16 3
226 43.04 precipitation 0.1 720 > th dose independent rect. 6 11
227 43.04 humidity 90.0 30 < th dose dependent rect. 20 1
232 43.05 precipitation 0.1 720 > th dose dependent rect. 6 11
263 43.19 precipitation 0.1 720 > th dose dependent rect. 13 4
268 43.20 precipitation 0.1 720 > th dose independent rect. 13 4
274 43.21 humidity 90.0 720 > th dose independent rect. 16 1
288 43.31 wind 9.0 1440 < th dose independent rect. 21 1
334 43.72 wind 1.0 30 < th dose dependent rect. 14 4
354 43.82 wind 1.0 30 < th dose independent rect. 17 1
365 43.82 wind 1.0 30 < th dose dependent rect. 17 1
387 43.88 atmosphere 995.0 30 > th dose independent rect. 21 23
426 44.13 wind 1.0 30 < th dose independent rect. 14 4
432 44.16 humidity 80.0 720 > th dose independent rect. 10 7
433 44.16 radiation 1.0 90 < th dose independent rect. 19 23
435 44.18 humidity 90.0 270 > th dose independent rect. 13 5
437 44.19 humidity 80.0 90 > th dose independent rect. 11 10
438 44.20 humidity 80.0 720 < th dose independent rect. 10 7
440 44.20 humidity 70.0 90 > th dose dependent rect. 16 5
448 44.25 humidity 80.0 720 > th dose independent rect. 10 5
451 44.25 humidity 80.0 720 > th dose dependent rect. 10 4
467 44.33 humidity 80.0 720 < th dose independent rect. 8 9
478 44.35 humidity 80.0 720 > th dose independent rect. 11 3
485 44.36 precipitation 0.1 720 < th dose independent rect. 13 8
487 44.36 humidity 80.0 720 < th dose independent rect. 6 11
490 44.36 precipitation 0.1 720 < th dose dependent rect. 13 8
491 44.36 precipitation 0.1 720 > th dose dependent rect. 24 17
581 44.55 humidity 80.0 720 > th dose independent rect. 2 16
591 44.56 precipitation 0.1 720 > th dose independent rect. 24 17
603 44.57 radiation 10.0 270 < th dose independent rect. 14 15
633 44.63 precipitation 0.1 720 < th dose independent rect. 9 8
635 44.63 precipitation 0.1 720 < th dose dependent rect. 9 8
666 44.66 radiation 20.0 270 < th dose dependent rect. 14 15
667 44.66 humidity 60.0 720 > th dose dependent rect. 1 17
673 44.67 precipitation 0.1 720 > th dose dependent rect. 13 1
720 44.71 precipitation 0.1 720 < th dose independent rect. 11 22
724 44.71 precipitation 0.1 720 < th dose dependent rect. 11 22
726 44.72 atmosphere 1005.0 270 > th dose independent rect. 17 1
791 44.78 humidity 50.0 30 > th dose independent rect. 21 23
806 44.80 humidity 80.0 720 > th dose independent sin 0 NA
839 44.82 humidity 80.0 720 < th dose independent sin 0 NA
909 44.89 humidity 80.0 1440 < th dose independent rect. 11 2
920 44.90 precipitation 0.1 720 > th dose independent sin 1 NA
921 44.90 precipitation 0.1 720 < th dose independent sin 1 NA
926 44.90 precipitation 0.1 720 < th dose dependent sin 1 NA
934 44.91 precipitation 0.1 1440 < th dose independent rect. 5 12
942 44.91 precipitation 0.1 1440 < th dose dependent rect. 5 12
988 44.96 humidity 70.0 720 > th dose dependent sin 0 NA
1000 44.97 humidity 70.0 270 > th dose independent rect. 14 15