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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0205200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Integrase, catalytic region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.83 (0.0309) R2 : 0.101
β1 : -0.694 (0.113) R2dD : 0.0767 R2D : 0.0404
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.315 (0.0661) R2dN8 : 0.0602 R2N8 : 0.0238
σ : 0.581
deviance : 154.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.19 0.552 3.84 -0.848 0.2 0.82 0.259 -1.73 -0.308 5.91 1.774 2 -- --
140.56 0.552 3.82 -0.81 0.205 0.628 0.129 -- -0.297 6.31 2 2 -- --
137.97 0.551 3.84 -0.843 0.201 0.808 -- -1.68 -0.308 5.99 1.8 2 -- --
140.59 0.552 3.82 -0.806 0.207 0.623 -- -- -0.298 6.14 2 2 -- --
139.69 0.553 3.85 -0.871 -- 0.885 -- -1.67 -0.308 -- 2 2 -- --
146.78 0.568 3.83 -0.707 0.382 -- 0.183 -- -0.324 5.17 -- -- -- --
146.86 0.568 3.83 -0.708 0.384 -- -- -- -0.325 5.15 -- -- -- --
142.43 0.556 3.82 -0.825 -- 0.744 -- -- -0.29 -- 2.069 2 -- --
156.58 0.583 3.8 -- 0.27 0.517 -- -- -0.225 5.73 1.504 2 -- --
154.57 0.581 3.83 -0.694 -- -- -- -- -0.315 -- -- -- -- --
160.06 0.592 3.81 -- 0.371 -- -- -- -0.246 5.22 -- -- -- --
159.54 0.588 3.81 -- -- 0.646 -- -- -0.208 -- 1.737 2 -- --
167.27 0.604 3.81 -- -- -- -- -- -0.238 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.94 wind 1.0 10 > th dose independent rect. 11 22
2 138.18 temperature 25.0 1440 < th dose independent rect. 20 1
3 138.64 temperature 25.0 1440 > th dose independent rect. 20 1
4 138.96 wind 3.0 14400 < th dose independent rect. 10 3
5 138.96 wind 3.0 14400 > th dose independent rect. 8 5
7 139.04 wind 3.0 14400 > th dose independent rect. 10 3
20 139.47 wind 5.0 14400 < th dose dependent rect. 10 1
26 139.63 wind 5.0 14400 < th dose dependent rect. 8 5
30 139.69 wind 5.0 14400 < th dose dependent rect. 9 3
41 139.93 wind 9.0 14400 < th dose dependent rect. 10 1
52 140.14 wind 1.0 14400 > th dose dependent rect. 10 1
64 140.24 wind 1.0 10 < th dose independent rect. 4 23
67 140.26 wind 1.0 14400 > th dose dependent rect. 8 5
84 140.38 wind 3.0 1440 < th dose dependent rect. 11 1
105 140.56 wind 1.0 10 > th dose independent rect. 23 10
116 140.64 wind 1.0 14400 > th dose dependent rect. 12 1
120 140.68 wind 1.0 10 > th dose independent rect. 21 12
125 140.72 wind 3.0 1440 < th dose independent rect. 11 1
131 140.75 wind 9.0 14400 < th dose dependent rect. 12 1
144 140.87 wind 7.0 10 < th dose dependent rect. 16 19
163 140.96 temperature 25.0 1440 > th dose dependent rect. 17 1
165 140.98 temperature 25.0 4320 > th dose dependent rect. 4 1
166 140.99 temperature 30.0 30 < th dose independent rect. 9 2
167 141.00 wind 3.0 1440 > th dose independent rect. 11 1
171 141.00 wind 3.0 10 < th dose dependent rect. 22 13
184 141.11 wind 7.0 720 < th dose independent rect. 15 9
187 141.12 wind 3.0 14400 < th dose independent rect. 19 4
197 141.15 wind 3.0 10 < th dose dependent rect. 20 15
204 141.18 wind 3.0 14400 < th dose independent rect. 19 19
211 141.21 temperature 30.0 30 < th dose dependent rect. 10 1
230 141.26 wind 7.0 720 < th dose independent rect. 15 19
232 141.26 radiation 1.0 30 > th dose dependent rect. 16 14
234 141.28 wind 3.0 14400 < th dose independent rect. 21 2
246 141.33 wind 1.0 270 < th dose dependent rect. 21 2
249 141.34 wind 3.0 14400 > th dose independent rect. 19 19
251 141.34 wind 3.0 10 < th dose dependent rect. 9 22
252 141.35 wind 3.0 14400 < th dose dependent rect. 21 3
258 141.37 wind 7.0 720 < th dose independent rect. 12 15
261 141.37 wind 7.0 720 < th dose independent rect. 12 23
270 141.40 wind 3.0 14400 < th dose dependent rect. 19 18
272 141.41 wind 3.0 10 < th dose dependent rect. 17 18
286 141.45 humidity 50.0 720 > th dose independent rect. 17 15
321 141.51 atmosphere 1015.0 10 < th dose dependent rect. 10 1
336 141.54 humidity 90.0 10 > th dose independent rect. 2 1
337 141.54 wind 3.0 14400 > th dose independent rect. 19 4
346 141.56 wind 1.0 720 > th dose dependent rect. 21 2
359 141.58 wind 7.0 14400 < th dose independent rect. 12 1
360 141.58 wind 1.0 30 < th dose independent rect. 1 2
372 141.60 humidity 80.0 10 > th dose dependent rect. 2 1
381 141.61 wind 1.0 10 > th dose dependent rect. 23 10
408 141.66 wind 1.0 1440 < th dose dependent rect. 8 4
427 141.68 wind 3.0 14400 < th dose dependent rect. 19 5
436 141.70 wind 1.0 10 < th dose independent rect. 22 9
441 141.70 humidity 80.0 30 < th dose dependent rect. 16 19
457 141.72 wind 1.0 270 < th dose dependent rect. 8 15
459 141.73 wind 7.0 14400 > th dose independent rect. 12 1
466 141.73 wind 1.0 10 < th dose dependent rect. 4 23
499 141.77 wind 3.0 30 < th dose dependent rect. 1 11
507 141.78 wind 1.0 30 < th dose dependent rect. 22 5
555 141.84 wind 1.0 10 < th dose independent rect. 1 6
574 141.86 radiation 1.0 1440 > th dose independent rect. 11 1
575 141.86 humidity 60.0 30 > th dose independent rect. 9 2
576 141.86 atmosphere 1005.0 1440 > th dose independent rect. 16 2
586 141.87 wind 3.0 14400 > th dose independent rect. 21 1
600 141.89 wind 3.0 14400 < th dose independent sin 4 NA
602 141.89 radiation 10.0 10 > th dose independent rect. 10 1
606 141.89 wind 1.0 30 < th dose dependent rect. 1 2
612 141.90 wind 7.0 1440 > th dose independent rect. 15 1
624 141.91 temperature 20.0 10 > th dose independent rect. 2 1
625 141.91 humidity 90.0 30 < th dose independent rect. 9 2
636 141.91 wind 3.0 10 < th dose dependent rect. 20 23
639 141.92 atmosphere 1010.0 30 < th dose dependent rect. 2 1
669 141.95 wind 3.0 14400 > th dose independent sin 3 NA
673 141.95 wind 7.0 720 < th dose independent rect. 15 12
694 141.96 wind 1.0 30 < th dose dependent rect. 17 10
709 141.97 humidity 60.0 10 > th dose dependent rect. 10 1
712 141.97 wind 1.0 14400 > th dose dependent rect. 21 17
735 141.99 temperature 20.0 10 > th dose independent rect. 10 1
736 141.99 temperature 10.0 43200 > th dose independent rect. 10 2
740 141.99 wind 7.0 720 < th dose independent rect. 22 21
745 142.00 wind 7.0 1440 < th dose independent rect. 15 1
747 142.00 humidity 90.0 14400 < th dose dependent rect. 2 2
755 142.00 wind 3.0 10 < th dose dependent rect. 1 23
756 142.01 wind 1.0 10 < th dose independent sin 13 NA
786 142.02 humidity 50.0 90 > th dose independent rect. 11 22
828 142.05 wind 9.0 10 < th dose independent rect. 10 1
847 142.06 wind 5.0 10 < th dose independent rect. 10 1
849 142.06 atmosphere 1005.0 43200 < th dose independent rect. 23 1
874 142.07 wind 9.0 14400 < th dose dependent rect. 21 17
878 142.08 wind 1.0 10 > th dose independent rect. 10 1
879 142.08 temperature 10.0 10 > th dose independent rect. 10 1
883 142.08 atmosphere 995.0 10 > th dose independent rect. 10 1
884 142.08 atmosphere 1015.0 10 < th dose independent rect. 10 1
886 142.08 precipitation 0.1 10 < th dose independent rect. 10 1
893 142.08 temperature 10.0 10 > th dose independent rect. 11 23
894 142.08 wind 3.0 14400 < th dose dependent sin 4 NA
895 142.08 precipitation 0.1 10 < th dose dependent rect. 10 1
912 142.09 wind 1.0 30 < th dose dependent rect. 10 17
914 142.10 wind 3.0 10 < th dose dependent sin 7 NA
937 142.12 wind 3.0 720 > th dose independent rect. 21 2
939 142.12 atmosphere 1005.0 1440 < th dose independent rect. 16 2
952 142.12 wind 1.0 14400 > th dose dependent rect. 19 19
960 142.13 wind 9.0 10 < th dose dependent rect. 10 1
964 142.13 wind 3.0 14400 < th dose dependent rect. 19 10
974 142.14 wind 7.0 10 < th dose dependent rect. 2 1
978 142.14 temperature 25.0 1440 > th dose dependent rect. 12 9
993 142.15 temperature 15.0 10 > th dose dependent rect. 2 1