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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0204600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPASE S) (Alpha-D-glucose-1-phosphate adenyl transferase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0295) R2 : 0.294
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.936 (0.0735) R2dC : 0.253 R2C : 0.237
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.33 (0.062) R2dN8 : 0.0569 R2N8 : 0.0407
σ : 0.555
deviance : 140.96
__
_____
C
peak time of C : 20.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.91 0.517 11 -0.258 0.939 0.274 -0.536 -6.09 0.295 21 29.2 3297 -- --
122.68 0.516 10.9 0.762 1.01 -0.443 -0.497 -- 0.408 20.7 28.76 2055 -- --
121.86 0.514 11 -0.246 0.939 0.265 -- -6.02 0.288 21 29.1 3247 -- --
123.28 0.517 10.9 0.764 0.984 -0.481 -- -- 0.353 20.9 29.2 2127 -- --
171.41 0.61 11.1 -0.84 -- 0.594 -- -7.92 0.224 -- 28.79 2938 -- --
128.94 0.532 10.9 0.622 0.937 -- -0.596 -- 0.402 20.8 -- -- -- --
130.13 0.534 10.9 0.641 0.937 -- -- -- 0.402 20.9 -- -- -- --
175.65 0.617 10.9 0.65 -- -0.35 -- -- 0.333 -- 29.5 4311 -- --
137.56 0.546 10.9 -- 0.982 -0.324 -- -- 0.311 20.9 29.03 2107 -- --
180.25 0.627 10.9 0.641 -- -- -- -- 0.395 -- -- -- -- --
140.96 0.555 10.9 -- 0.936 -- -- -- 0.33 20.9 -- -- -- --
186.19 0.636 10.9 -- -- 0.412 -- -- 0.293 -- 24.1 675 -- --
191.09 0.645 10.9 -- -- -- -- -- 0.324 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.28 temperature 25.0 30 > th dose dependent rect. 6 1
3 109.10 atmosphere 1010.0 30 < th dose independent rect. 6 1
4 109.24 atmosphere 1010.0 30 < th dose dependent rect. 6 1
5 109.29 radiation 10.0 30 < th dose independent rect. 6 1
6 109.49 temperature 25.0 30 > th dose dependent rect. 4 3
9 112.60 temperature 25.0 30 > th dose dependent rect. 2 5
13 113.14 wind 1.0 30 > th dose dependent rect. 6 1
16 114.12 temperature 25.0 90 > th dose independent rect. 5 2
18 114.38 humidity 90.0 30 < th dose dependent rect. 6 1
20 114.61 radiation 1.0 10 > th dose dependent rect. 6 1
24 115.71 radiation 20.0 30 < th dose dependent rect. 6 1
33 116.77 wind 9.0 30 < th dose independent rect. 7 23
35 116.88 wind 9.0 43200 > th dose dependent rect. 20 1
37 117.01 wind 7.0 4320 < th dose independent rect. 19 1
39 117.18 wind 7.0 4320 > th dose independent rect. 19 1
42 117.33 radiation 1.0 43200 < th dose dependent rect. 21 6
43 117.34 wind 9.0 43200 > th dose independent rect. 20 1
44 117.37 wind 9.0 43200 < th dose independent rect. 20 1
45 117.42 humidity 80.0 30 > th dose independent rect. 6 1
47 117.48 wind 9.0 1440 < th dose independent rect. 7 1
48 117.48 temperature 10.0 1440 > th dose independent rect. 7 1
52 117.48 temperature 30.0 1440 < th dose independent rect. 7 1
56 117.48 humidity 50.0 1440 > th dose independent rect. 7 1
61 117.48 atmosphere 995.0 1440 > th dose independent rect. 7 1
62 117.48 atmosphere 1015.0 1440 < th dose independent rect. 7 1
63 117.48 temperature 10.0 1440 > th dose independent rect. 8 23
67 117.55 wind 1.0 30 > th dose independent rect. 6 1
68 117.59 wind 5.0 30 < th dose independent rect. 6 1
71 117.59 temperature 10.0 30 > th dose independent rect. 6 1
73 117.59 temperature 30.0 30 < th dose independent rect. 6 1
74 117.59 humidity 50.0 30 > th dose independent rect. 6 1
77 117.59 atmosphere 995.0 30 > th dose independent rect. 6 1
82 117.59 precipitation 0.1 30 < th dose independent rect. 6 1
83 117.59 temperature 10.0 30 > th dose independent rect. 7 23
84 117.59 precipitation 0.1 30 < th dose dependent rect. 6 1
85 117.61 humidity 50.0 14400 > th dose independent rect. 17 17
87 117.69 radiation 1.0 30 > th dose independent rect. 6 1
89 117.76 humidity 90.0 30 < th dose independent rect. 6 1
92 117.86 humidity 50.0 14400 > th dose independent rect. 16 19
95 117.94 wind 1.0 14400 < th dose dependent rect. 2 1
102 118.10 humidity 50.0 14400 < th dose independent rect. 15 20
105 118.15 humidity 50.0 30 > th dose dependent rect. 6 1
108 118.18 wind 7.0 4320 > th dose dependent rect. 19 1
109 118.19 humidity 50.0 14400 < th dose independent rect. 17 18
115 118.34 humidity 50.0 14400 < th dose dependent rect. 16 19
116 118.36 wind 9.0 30 < th dose dependent rect. 6 1
126 118.53 humidity 50.0 14400 < th dose independent sin 11 NA
127 118.54 humidity 50.0 14400 < th dose independent rect. 15 3
143 118.55 humidity 60.0 14400 < th dose dependent rect. 17 16
148 118.64 wind 1.0 43200 < th dose dependent rect. 20 1
153 118.86 atmosphere 995.0 43200 < th dose dependent rect. 15 1
180 119.01 wind 1.0 14400 < th dose independent rect. 2 1
181 119.01 wind 9.0 14400 > th dose dependent rect. 18 3
183 119.06 humidity 50.0 14400 > th dose independent sin 11 NA
184 119.06 atmosphere 995.0 43200 < th dose independent rect. 15 1
192 119.13 atmosphere 995.0 43200 > th dose independent rect. 15 1
195 119.16 atmosphere 995.0 30 > th dose dependent rect. 6 1
196 119.18 wind 1.0 14400 > th dose independent rect. 2 1
198 119.26 wind 7.0 4320 < th dose independent rect. 18 3
200 119.26 atmosphere 995.0 43200 < th dose independent rect. 14 8
204 119.27 humidity 50.0 14400 > th dose independent rect. 15 15
208 119.28 radiation 20.0 4320 > th dose dependent rect. 16 1
222 119.29 humidity 50.0 14400 > th dose independent rect. 15 6
229 119.31 humidity 50.0 14400 > th dose independent rect. 15 11
237 119.34 wind 7.0 4320 > th dose independent rect. 17 5
244 119.37 humidity 60.0 14400 < th dose independent rect. 17 16
246 119.40 wind 7.0 4320 < th dose independent rect. 17 5
253 119.42 humidity 60.0 14400 > th dose independent rect. 18 14
260 119.45 wind 7.0 4320 > th dose independent rect. 17 9
264 119.47 wind 7.0 4320 < th dose independent rect. 17 9
271 119.49 wind 9.0 14400 > th dose independent rect. 18 3
280 119.53 humidity 60.0 14400 > th dose independent rect. 18 3
287 119.54 wind 7.0 43200 < th dose independent rect. 18 3
290 119.56 humidity 60.0 14400 > th dose independent rect. 18 1
294 119.56 wind 5.0 4320 > th dose dependent rect. 18 4
316 119.64 wind 9.0 4320 < th dose independent rect. 15 7
331 119.69 humidity 60.0 14400 < th dose dependent rect. 17 3
364 119.79 wind 9.0 14400 > th dose dependent rect. 18 7
380 119.86 atmosphere 995.0 43200 > th dose independent sin 20 NA
383 119.86 wind 9.0 43200 > th dose dependent rect. 17 13
384 119.87 humidity 60.0 14400 < th dose independent rect. 18 1
385 119.87 atmosphere 1005.0 14400 < th dose independent rect. 22 1
423 119.95 atmosphere 995.0 43200 < th dose independent sin 20 NA
425 119.95 humidity 60.0 14400 < th dose independent rect. 18 14
434 119.99 humidity 60.0 14400 < th dose independent rect. 17 3
453 120.01 atmosphere 995.0 43200 > th dose independent rect. 16 11
467 120.04 wind 9.0 4320 > th dose independent rect. 15 8
471 120.04 wind 9.0 4320 > th dose independent rect. 15 11
473 120.04 atmosphere 995.0 43200 > th dose independent rect. 5 12
492 120.05 atmosphere 995.0 43200 > th dose independent rect. 5 14
513 120.07 atmosphere 995.0 43200 < th dose dependent rect. 15 10
515 120.08 atmosphere 995.0 43200 > th dose independent rect. 17 8
530 120.10 atmosphere 995.0 43200 > th dose independent rect. 15 16
533 120.11 atmosphere 995.0 43200 < th dose independent rect. 17 8
541 120.12 atmosphere 995.0 43200 < th dose independent rect. 16 11
544 120.12 wind 7.0 4320 > th dose dependent rect. 15 12
548 120.13 atmosphere 995.0 43200 < th dose independent rect. 15 15
552 120.14 atmosphere 995.0 43200 > th dose independent rect. 18 4
556 120.14 atmosphere 995.0 43200 < th dose independent rect. 5 17
560 120.15 atmosphere 995.0 43200 < th dose independent rect. 18 4
574 120.16 atmosphere 995.0 43200 < th dose independent rect. 4 15
581 120.17 wind 5.0 4320 < th dose independent rect. 21 1
590 120.18 atmosphere 995.0 43200 < th dose independent rect. 5 12
631 120.22 temperature 25.0 4320 > th dose dependent rect. 6 2
724 120.32 wind 9.0 43200 > th dose independent rect. 18 11
752 120.37 wind 9.0 4320 < th dose independent sin 15 NA
754 120.37 wind 5.0 4320 > th dose independent rect. 21 1
755 120.37 temperature 25.0 1440 < th dose independent rect. 5 2
760 120.37 wind 1.0 4320 < th dose dependent rect. 9 2
766 120.39 atmosphere 995.0 43200 < th dose dependent rect. 18 4
776 120.43 temperature 25.0 1440 > th dose independent rect. 5 3
804 120.46 wind 9.0 43200 > th dose independent rect. 18 6
809 120.46 wind 9.0 43200 > th dose dependent rect. 20 8
810 120.47 atmosphere 995.0 43200 > th dose independent sin 14 NA
821 120.48 wind 9.0 43200 > th dose independent rect. 20 8
832 120.50 wind 9.0 4320 > th dose independent sin 14 NA
841 120.51 wind 7.0 4320 > th dose dependent sin 14 NA
844 120.52 temperature 30.0 1440 < th dose independent rect. 11 1
850 120.54 atmosphere 995.0 43200 < th dose independent sin 14 NA
851 120.54 wind 9.0 43200 > th dose independent rect. 17 14
854 120.55 temperature 25.0 4320 > th dose independent rect. 6 1
865 120.56 wind 9.0 43200 < th dose independent rect. 18 6
868 120.56 temperature 30.0 1440 < th dose independent rect. 2 12
872 120.56 temperature 30.0 720 < th dose independent rect. 6 22
882 120.57 temperature 30.0 1440 < th dose independent rect. 21 17
889 120.58 temperature 30.0 1440 < th dose independent rect. 4 10
919 120.61 temperature 30.0 1440 < th dose independent rect. 8 6
941 120.63 temperature 25.0 4320 > th dose independent rect. 19 1
942 120.63 wind 9.0 43200 < th dose independent rect. 18 10
964 120.66 wind 9.0 14400 > th dose dependent rect. 18 17
965 120.67 temperature 30.0 1440 < th dose independent sin 7 NA
966 120.67 temperature 30.0 1440 < th dose independent rect. 10 4
977 120.68 wind 9.0 43200 < th dose independent rect. 20 8
991 120.70 atmosphere 995.0 30 > th dose independent rect. 7 23
1000 120.72 precipitation 0.1 43200 > th dose dependent rect. 17 1