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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0203400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0244) R2 : 0.00013
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0125 (0.0513) R2dN8 : 0.000167 R2N8 : 0.00013
σ : 0.459
deviance : 96.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.69 0.452 3.34 -0.0121 0.145 0.0213 -0.314 0.946 -0.0109 4.57 56.6 5726 -- --
92.96 0.449 3.35 -0.0538 0.149 0.315 -0.331 -- 0.000773 4.55 35 9096 -- --
92.57 0.448 3.34 -0.029 0.155 0.0451 -- 1.08 -0.0157 5.26 57.02 6562 -- --
92.93 0.449 3.35 0.0477 0.139 0.435 -- -- 0.0259 6.43 46 11429 -- --
93.71 0.451 3.34 -0.0201 -- 0.045 -- 1.12 -0.00962 -- 57.56 6548 -- --
95.04 0.457 3.35 0.0706 0.147 -- -0.303 -- -0.00918 4.52 -- -- -- --
95.23 0.457 3.35 0.0732 0.15 -- -- -- -0.00751 5.31 -- -- -- --
94 0.452 3.35 0.051 -- 0.471 -- -- 0.0265 -- 45.98 11700 -- --
92.84 0.449 3.34 -- 0.148 0.486 -- -- 0.0263 5.35 45.92 12214 -- --
96.41 0.459 3.35 0.0784 -- -- -- -- -0.00377 -- -- -- -- --
95.37 0.457 3.35 -- 0.151 -- -- -- -0.0157 5.29 -- -- -- --
94.07 0.452 3.35 -- -- 0.483 -- -- 0.0205 -- 45.77 11672 -- --
96.57 0.459 3.36 -- -- -- -- -- -0.0125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.13 radiation 40.0 43200 < th dose dependent rect. 23 1
3 81.60 radiation 10.0 4320 < th dose dependent rect. 23 1
10 81.93 temperature 25.0 30 > th dose independent rect. 22 1
11 81.96 wind 9.0 1440 < th dose independent rect. 23 1
12 81.96 temperature 10.0 1440 > th dose independent rect. 23 1
15 81.96 temperature 30.0 1440 < th dose independent rect. 23 1
19 81.96 humidity 50.0 1440 > th dose independent rect. 23 1
29 81.96 atmosphere 995.0 1440 > th dose independent rect. 23 1
30 81.96 radiation 1.0 1440 < th dose independent rect. 23 1
50 81.96 temperature 10.0 1440 > th dose independent rect. 24 23
59 82.10 temperature 20.0 30 > th dose dependent rect. 22 1
60 82.11 wind 3.0 30 < th dose independent rect. 22 1
62 82.18 atmosphere 1005.0 30 > th dose dependent rect. 22 1
63 82.21 humidity 80.0 30 > th dose independent rect. 22 1
67 82.29 humidity 90.0 30 < th dose independent rect. 22 1
70 82.39 wind 5.0 30 < th dose dependent rect. 22 1
72 82.40 atmosphere 1005.0 30 > th dose independent rect. 22 1
75 82.47 wind 1.0 30 > th dose independent rect. 22 1
77 82.47 precipitation 0.1 30 < th dose independent rect. 22 1
78 82.47 precipitation 0.1 30 < th dose dependent rect. 22 1
82 82.52 temperature 10.0 30 > th dose independent rect. 22 1
84 82.52 temperature 30.0 30 < th dose independent rect. 22 1
85 82.52 humidity 50.0 30 > th dose independent rect. 22 1
89 82.52 atmosphere 1010.0 30 < th dose independent rect. 22 1
91 82.52 radiation 1.0 30 < th dose independent rect. 22 1
96 82.52 temperature 10.0 30 > th dose independent rect. 23 23
97 82.52 humidity 50.0 30 > th dose dependent rect. 22 1
98 82.52 radiation 1.0 30 < th dose dependent rect. 22 1
108 82.88 atmosphere 1015.0 30 < th dose dependent rect. 22 1
111 82.94 humidity 90.0 30 < th dose dependent rect. 22 1
113 83.14 wind 1.0 30 > th dose dependent rect. 22 1
120 83.49 temperature 30.0 30 < th dose dependent rect. 22 1
127 83.86 atmosphere 1000.0 30 > th dose independent rect. 23 23
128 83.91 temperature 25.0 90 > th dose independent rect. 20 3
164 84.43 wind 9.0 30 < th dose independent rect. 23 23
173 84.76 precipitation 0.1 720 < th dose independent rect. 15 8
174 84.76 precipitation 0.1 720 < th dose dependent rect. 15 8
179 84.84 precipitation 0.1 30 < th dose independent rect. 23 23
180 84.84 precipitation 0.1 30 < th dose dependent rect. 23 23
181 84.86 atmosphere 995.0 720 > th dose independent rect. 23 16
184 84.90 humidity 50.0 720 > th dose independent rect. 3 8
186 84.98 temperature 10.0 720 > th dose independent rect. 3 8
187 84.98 atmosphere 995.0 720 > th dose independent rect. 3 8
188 84.98 temperature 10.0 720 > th dose independent rect. 11 16
191 85.11 temperature 10.0 720 > th dose independent rect. 15 8
192 85.11 temperature 10.0 720 > th dose independent rect. 23 16
196 85.30 atmosphere 995.0 720 > th dose independent rect. 11 16
198 85.34 wind 9.0 720 < th dose independent rect. 3 8
201 85.50 atmosphere 995.0 720 > th dose independent rect. 15 8
212 86.05 precipitation 0.1 1440 < th dose independent rect. 23 1
213 86.05 precipitation 0.1 1440 < th dose dependent rect. 23 1
215 86.29 precipitation 0.1 720 < th dose independent rect. 11 16
217 86.29 precipitation 0.1 720 < th dose dependent rect. 11 16
221 86.69 precipitation 0.1 720 < th dose independent rect. 23 16
222 86.69 precipitation 0.1 720 < th dose dependent rect. 23 16
224 86.87 atmosphere 1015.0 720 < th dose independent rect. 3 8
225 86.88 precipitation 0.1 720 < th dose independent rect. 3 8
226 86.88 precipitation 0.1 720 < th dose dependent rect. 3 8
231 87.42 humidity 50.0 30 > th dose independent rect. 23 23
232 87.45 temperature 25.0 90 > th dose independent rect. 20 7
234 87.57 humidity 50.0 720 > th dose independent rect. 23 16
237 87.66 temperature 25.0 270 > th dose dependent rect. 19 8
241 87.76 wind 9.0 720 < th dose independent rect. 15 8
252 88.01 wind 1.0 720 > th dose independent rect. 15 8
256 88.08 radiation 40.0 720 < th dose independent rect. 15 8
266 88.42 atmosphere 1005.0 30 > th dose dependent rect. 20 3
284 88.71 temperature 30.0 30 < th dose independent rect. 23 23
307 89.09 atmosphere 1000.0 30 > th dose independent rect. 3 23
316 89.25 atmosphere 1005.0 90 > th dose dependent rect. 2 1
318 89.27 wind 9.0 720 < th dose independent rect. 23 16
322 89.33 atmosphere 1005.0 10 > th dose dependent rect. 2 2
337 89.52 temperature 15.0 30 > th dose independent rect. 3 23
346 89.63 radiation 1.0 43200 < th dose dependent rect. 3 1
350 89.69 humidity 80.0 14400 < th dose dependent rect. 3 6
351 89.71 wind 1.0 30 > th dose independent rect. 23 23
365 89.79 temperature 10.0 30 > th dose dependent rect. 23 23
399 90.12 humidity 70.0 14400 > th dose independent rect. 8 1
402 90.16 wind 1.0 14400 < th dose dependent rect. 6 1
413 90.23 wind 9.0 720 < th dose independent rect. 11 16
419 90.27 temperature 25.0 90 > th dose independent rect. 1 1
425 90.34 humidity 70.0 14400 > th dose independent rect. 4 5
426 90.35 humidity 70.0 14400 < th dose independent rect. 8 1
429 90.35 temperature 30.0 720 < th dose independent rect. 3 8
432 90.35 humidity 70.0 14400 > th dose independent rect. 22 11
434 90.36 humidity 70.0 14400 > th dose independent rect. 6 3
441 90.37 temperature 25.0 90 > th dose dependent rect. 2 1
443 90.38 atmosphere 1010.0 30 < th dose dependent rect. 2 1
445 90.39 radiation 10.0 30 < th dose independent rect. 23 23
454 90.43 wind 3.0 30 < th dose independent rect. 2 1
455 90.43 temperature 15.0 90 > th dose independent rect. 23 12
456 90.43 atmosphere 1000.0 90 > th dose independent rect. 23 12
461 90.44 wind 3.0 30 < th dose dependent rect. 2 1
477 90.46 temperature 10.0 30 > th dose independent rect. 2 1
480 90.46 temperature 30.0 30 < th dose independent rect. 2 1
481 90.46 humidity 50.0 30 > th dose independent rect. 2 1
484 90.46 humidity 90.0 30 > th dose independent rect. 2 1
485 90.46 atmosphere 995.0 30 > th dose independent rect. 2 1
486 90.46 atmosphere 1010.0 30 < th dose independent rect. 2 1
488 90.46 radiation 1.0 30 < th dose independent rect. 2 1
493 90.46 precipitation 0.1 30 < th dose independent rect. 2 1
498 90.46 radiation 1.0 30 < th dose dependent rect. 2 1
503 90.46 precipitation 0.1 30 < th dose dependent rect. 2 1
505 90.47 humidity 50.0 30 > th dose dependent rect. 2 1
513 90.48 atmosphere 1005.0 30 > th dose independent rect. 2 1
528 90.51 temperature 30.0 30 < th dose dependent rect. 2 1
540 90.54 wind 1.0 30 > th dose independent rect. 2 1
548 90.55 wind 9.0 1440 < th dose independent rect. 3 1
549 90.55 temperature 10.0 1440 > th dose independent rect. 3 1
552 90.55 temperature 30.0 1440 < th dose independent rect. 3 1
556 90.55 humidity 50.0 1440 > th dose independent rect. 3 1
565 90.55 atmosphere 995.0 1440 > th dose independent rect. 3 1
566 90.55 radiation 1.0 1440 < th dose independent rect. 3 1
586 90.55 temperature 10.0 1440 > th dose independent rect. 4 23
611 90.59 atmosphere 1000.0 720 > th dose independent rect. 21 14
613 90.61 precipitation 0.1 30 < th dose independent rect. 3 23
615 90.61 precipitation 0.1 30 < th dose dependent rect. 3 23
645 90.63 temperature 25.0 720 > th dose dependent rect. 3 5
676 90.67 humidity 70.0 14400 < th dose independent rect. 6 3
686 90.67 wind 9.0 30 < th dose independent rect. 3 23
702 90.75 wind 1.0 14400 < th dose independent rect. 6 1
707 90.76 atmosphere 1000.0 720 > th dose independent rect. 23 10
710 90.77 humidity 90.0 30 < th dose independent rect. 20 3
723 90.81 temperature 10.0 90 > th dose dependent rect. 23 12
733 90.86 radiation 20.0 30 < th dose dependent rect. 23 23
737 90.89 atmosphere 995.0 90 > th dose independent rect. 11 12
739 90.90 temperature 30.0 90 < th dose independent rect. 11 12
746 90.93 temperature 30.0 720 < th dose independent rect. 15 8
752 90.95 precipitation 0.1 720 < th dose independent rect. 13 22
755 90.95 precipitation 0.1 720 < th dose dependent rect. 13 22
758 90.98 atmosphere 1000.0 720 > th dose independent rect. 23 8
762 91.01 wind 1.0 720 > th dose independent rect. 11 2
772 91.03 atmosphere 1000.0 720 > th dose independent rect. 19 16
773 91.04 wind 1.0 14400 < th dose dependent rect. 4 4
774 91.05 temperature 25.0 720 > th dose independent rect. 3 6
779 91.08 atmosphere 995.0 720 > th dose independent rect. 1 22
782 91.08 temperature 25.0 720 > th dose dependent rect. 24 9
783 91.09 wind 5.0 14400 < th dose independent rect. 11 1
786 91.10 atmosphere 1015.0 90 < th dose independent rect. 11 12
793 91.13 wind 1.0 14400 > th dose independent rect. 5 2
797 91.14 humidity 80.0 90 > th dose independent rect. 20 3
799 91.15 temperature 20.0 30 > th dose independent rect. 23 8
801 91.15 atmosphere 995.0 720 > th dose independent rect. 13 22
802 91.15 temperature 10.0 720 > th dose dependent rect. 23 1
806 91.16 atmosphere 1000.0 90 > th dose independent rect. 23 20
811 91.18 temperature 10.0 720 > th dose independent rect. 11 2
812 91.18 atmosphere 995.0 720 > th dose independent rect. 11 2
813 91.18 atmosphere 1015.0 720 < th dose independent rect. 11 2
814 91.18 temperature 10.0 720 > th dose independent rect. 13 22
819 91.19 humidity 50.0 90 > th dose independent rect. 23 12
823 91.20 wind 9.0 90 < th dose independent rect. 23 12
824 91.20 atmosphere 1015.0 30 < th dose independent rect. 23 23
826 91.21 atmosphere 1000.0 90 > th dose independent rect. 3 16
828 91.22 temperature 10.0 90 > th dose independent rect. 11 12
831 91.22 precipitation 0.1 90 < th dose independent rect. 23 12
835 91.22 precipitation 0.1 90 < th dose dependent rect. 23 12
837 91.23 temperature 10.0 30 > th dose dependent rect. 23 21
838 91.24 temperature 25.0 270 > th dose independent sin 13 NA
859 91.25 precipitation 0.1 720 < th dose independent rect. 11 2
861 91.25 precipitation 0.1 720 < th dose dependent rect. 11 2
867 91.27 humidity 50.0 720 > th dose independent rect. 11 2
869 91.27 temperature 25.0 30 > th dose independent rect. 24 11
875 91.28 atmosphere 1005.0 30 > th dose independent rect. 20 3
890 91.31 wind 1.0 90 > th dose independent rect. 11 12
896 91.31 temperature 15.0 30 > th dose dependent rect. 23 8
900 91.33 wind 3.0 14400 > th dose independent rect. 10 1
901 91.33 humidity 90.0 90 < th dose independent rect. 2 1
902 91.33 wind 9.0 720 < th dose independent rect. 11 2
909 91.35 wind 1.0 14400 < th dose independent rect. 4 4
913 91.37 temperature 30.0 90 < th dose independent rect. 23 12
916 91.38 temperature 20.0 30 > th dose independent rect. 3 4
919 91.38 temperature 10.0 90 > th dose dependent rect. 3 16
934 91.40 humidity 90.0 90 < th dose independent rect. 1 22
943 91.41 humidity 50.0 30 > th dose independent rect. 3 23
946 91.42 precipitation 0.1 90 < th dose independent rect. 11 12
948 91.42 precipitation 0.1 90 < th dose dependent rect. 11 12
972 91.44 wind 1.0 14400 > th dose independent rect. 4 4
975 91.44 atmosphere 1005.0 270 > th dose dependent rect. 19 1
982 91.45 temperature 15.0 720 > th dose independent rect. 14 1
987 91.45 atmosphere 1000.0 720 > th dose independent rect. 23 12
992 91.46 temperature 15.0 10 > th dose independent rect. 14 12
993 91.46 temperature 25.0 30 > th dose dependent rect. 24 11
995 91.47 atmosphere 1015.0 720 < th dose independent rect. 15 8
996 91.47 wind 5.0 14400 < th dose dependent rect. 10 2
999 91.48 temperature 25.0 10 > th dose independent rect. 24 20