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Os11g0199600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCHC-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0129) R2 : 0.00864
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0542 (0.0272) R2dN8 : 0.0112 R2N8 : 0.00864
σ : 0.243
deviance : 27.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
12.51 0.166 11 0.189 0.125 -0.433 -0.146 -0.0315 0.0961 7.97 10.23 230 -- --
12.52 0.165 11 0.189 0.125 -0.434 -0.15 -- 0.0961 7.96 10.23 229 -- --
12.52 0.165 11 0.179 0.147 -0.421 -- -0.0753 0.0935 7.63 10.61 201 -- --
12.54 0.165 11 0.179 0.149 -0.416 -- -- 0.0928 7.49 10.6 199 -- --
13.39 0.17 10.9 0.175 -- -0.425 -- -0.0241 0.116 -- 10.78 242 -- --
15.95 0.187 11 0.12 0.429 -- 0.197 -- 0.0591 3.05 -- -- -- --
16.08 0.188 11 0.116 0.431 -- -- -- 0.0578 3.1 -- -- -- --
13.11 0.169 10.9 0.187 -- -0.46 -- -- 0.109 -- 10.01 296 -- --
13.28 0.17 11 -- 0.178 -0.387 -- -- 0.0708 6.9 11.01 164 -- --
26.67 0.241 11 0.134 -- -- -- -- 0.0691 -- -- -- -- --
16.43 0.19 11 -- 0.433 -- -- -- 0.045 3.1 -- -- -- --
14.01 0.174 11 -- -- -0.459 -- -- 0.0791 -- 10.23 299 -- --
27.14 0.243 11 -- -- -- -- -- 0.0542 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.45 temperature 30 10 < th dose dependent sin 22 NA
5 11.51 temperature 30 10 < th dose dependent rect. 6 13
6 11.58 temperature 30 90 < th dose dependent rect. 5 14
19 11.93 temperature 20 10 > th dose dependent sin 23 NA
71 12.29 temperature 25 30 < th dose independent sin 22 NA
74 12.30 temperature 25 30 > th dose independent sin 22 NA
77 12.30 temperature 20 10 > th dose dependent rect. 7 23
83 12.32 temperature 20 10 > th dose dependent rect. 9 13
109 12.46 temperature 25 30 < th dose independent rect. 6 12
118 12.47 temperature 20 30 > th dose dependent rect. 9 16
119 12.47 temperature 30 90 < th dose dependent rect. 5 18
154 12.55 temperature 30 10 < th dose dependent rect. 6 17
156 12.55 radiation 20 90 < th dose dependent rect. 5 23
158 12.57 temperature 25 30 > th dose independent rect. 9 13
159 12.57 humidity 70 10 > th dose dependent rect. 6 13
168 12.59 temperature 25 30 > th dose independent rect. 9 10
184 12.62 temperature 25 30 > th dose independent rect. 7 11
206 12.64 temperature 30 30 < th dose dependent rect. 17 23
207 12.65 radiation 10 270 > th dose independent rect. 6 11
227 12.65 temperature 20 10 > th dose dependent rect. 23 23
229 12.66 radiation 10 270 > th dose independent no NA NA
318 12.67 temperature 20 30 > th dose dependent rect. 4 21
345 12.70 temperature 30 10 < th dose dependent rect. 1 23
388 12.73 radiation 10 270 > th dose independent rect. 16 23
395 12.73 temperature 20 30 > th dose dependent rect. 20 23
397 12.74 temperature 30 90 < th dose dependent rect. 11 8
405 12.74 temperature 30 10 < th dose dependent rect. 21 23
412 12.75 temperature 20 10 > th dose dependent no NA NA
426 12.76 humidity 60 10 > th dose dependent sin 22 NA
446 12.78 temperature 30 30 < th dose dependent rect. 11 23
447 12.78 temperature 30 30 < th dose dependent rect. 13 23
448 12.78 temperature 30 30 < th dose dependent rect. 15 23
455 12.79 temperature 30 30 < th dose dependent no NA NA
461 12.80 radiation 10 90 > th dose independent sin 22 NA
462 12.80 radiation 10 270 > th dose independent sin 1 NA
592 12.84 temperature 20 10 > th dose dependent rect. 5 17
596 12.84 radiation 20 270 < th dose dependent rect. 20 23
620 12.86 temperature 30 30 < th dose dependent rect. 9 23
643 12.89 temperature 25 30 > th dose independent rect. 9 16
658 12.90 temperature 20 30 > th dose dependent rect. 4 13
679 12.92 temperature 10 10 > th dose dependent no NA NA
687 12.92 radiation 30 270 < th dose dependent rect. 9 23
703 12.93 temperature 30 30 < th dose dependent rect. 19 23
717 12.94 temperature 20 10 > th dose dependent rect. 4 15
795 12.98 radiation 20 90 < th dose dependent rect. 6 11
805 12.98 radiation 30 30 < th dose dependent rect. 17 23
816 12.99 radiation 20 10 < th dose dependent rect. 6 10
840 13.00 temperature 30 90 < th dose dependent rect. 23 23
851 13.01 radiation 20 270 < th dose dependent no NA NA
898 13.04 humidity 80 10 > th dose independent rect. 6 12
921 13.04 radiation 20 90 < th dose dependent rect. 11 23
964 13.06 temperature 30 10 < th dose dependent rect. 23 23
983 13.07 temperature 30 30 < th dose dependent rect. 5 23
992 13.08 humidity 70 10 > th dose dependent rect. 8 11