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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0199000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ankyrin repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.00718) R2 : 2.97e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00176 (0.0151) R2dN8 : 3.83e-05 R2N8 : 2.97e-05
σ : 0.135
deviance : 8.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
7.46 0.128 2.89 -0.0412 0.0717 -0.137 0.0974 1.1 -0.000177 11 30 9 -- --
7.67 0.13 2.88 0.0466 0.0756 -0.0666 0.0744 -- 0.00904 10.6 30 9 -- --
7.4 0.128 2.89 -0.0269 0.0685 -0.117 -- 0.876 -0.00251 10.7 30.03 8 -- --
7.69 0.13 2.88 0.0496 0.0752 -0.067 -- -- 0.00925 10.6 30 9 -- --
7.68 0.13 2.89 -0.0366 -- -0.137 -- 0.957 -0.00373 -- 30.03 8 -- --
7.83 0.131 2.88 0.0533 0.0854 -- 0.0776 -- 0.00836 11.5 -- -- -- --
7.85 0.131 2.88 0.0565 0.0851 -- -- -- 0.00865 11.4 -- -- -- --
8.03 0.133 2.88 0.0468 -- -0.0824 -- -- 0.00915 -- 30 9 -- --
7.76 0.13 2.88 -- 0.0744 -0.0708 -- -- 0.00381 10.5 30 9 -- --
8.31 0.135 2.88 0.0542 -- -- -- -- 0.00777 -- -- -- -- --
7.94 0.132 2.88 -- 0.0845 -- -- -- 0.00236 11.4 -- -- -- --
8.09 0.133 2.89 -- -- -0.0852 -- -- 0.00403 -- 30 9 -- --
8.38 0.135 2.89 -- -- -- -- -- 0.00176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 7.03 temperature 30.0 10 > th dose independent rect. 12 3
3 7.06 humidity 80.0 10 < th dose independent rect. 12 1
5 7.07 wind 9.0 10 < th dose independent rect. 13 23
8 7.08 atmosphere 1000.0 10 > th dose independent rect. 12 1
9 7.08 atmosphere 995.0 10 > th dose dependent rect. 12 1
11 7.09 wind 1.0 10 > th dose independent rect. 12 1
12 7.09 wind 5.0 30 > th dose independent rect. 12 1
15 7.09 temperature 30.0 30 < th dose independent rect. 12 1
16 7.09 humidity 60.0 10 > th dose independent rect. 12 1
20 7.09 wind 7.0 30 < th dose dependent rect. 12 1
24 7.10 wind 7.0 10 < th dose independent rect. 12 1
27 7.10 temperature 10.0 30 > th dose independent rect. 12 1
31 7.10 atmosphere 1015.0 30 < th dose independent rect. 12 1
32 7.10 radiation 1.0 30 > th dose independent rect. 12 1
34 7.10 precipitation 0.1 30 < th dose independent rect. 12 1
37 7.10 temperature 10.0 30 > th dose independent rect. 13 23
38 7.10 humidity 90.0 30 < th dose dependent rect. 12 1
41 7.10 precipitation 0.1 30 < th dose dependent rect. 12 1
52 7.11 temperature 10.0 10 > th dose dependent rect. 12 1
55 7.11 humidity 50.0 10 > th dose dependent rect. 12 1
64 7.12 wind 1.0 10 > th dose dependent rect. 12 1
74 7.13 atmosphere 1015.0 30 < th dose dependent rect. 12 1
75 7.13 temperature 25.0 10 > th dose dependent rect. 12 3
78 7.14 temperature 10.0 1440 > th dose independent rect. 13 1
84 7.14 atmosphere 995.0 1440 > th dose independent rect. 13 1
87 7.14 temperature 10.0 1440 > th dose independent rect. 14 23
98 7.15 radiation 1.0 30 > th dose dependent rect. 12 1
106 7.18 radiation 40.0 30 > th dose independent rect. 12 1
110 7.19 radiation 20.0 10 > th dose independent rect. 12 3
129 7.22 atmosphere 1000.0 30 > th dose independent rect. 13 23
130 7.22 radiation 1.0 10 > th dose dependent rect. 12 3
196 7.26 precipitation 0.1 10 < th dose independent rect. 13 23
204 7.26 precipitation 0.1 10 < th dose dependent rect. 13 23
214 7.27 humidity 80.0 10 < th dose independent rect. 12 3
217 7.27 atmosphere 1015.0 30 < th dose independent rect. 13 23
306 7.30 temperature 30.0 30 < th dose dependent rect. 12 1
366 7.31 radiation 30.0 30 < th dose independent rect. 12 1
391 7.31 temperature 10.0 10 > th dose dependent rect. 15 21
395 7.32 wind 3.0 10 > th dose independent rect. 12 3
422 7.32 wind 1.0 90 > th dose dependent rect. 11 4
427 7.33 wind 7.0 10 < th dose independent rect. 12 3
428 7.33 humidity 50.0 10 > th dose independent rect. 12 3
430 7.33 wind 7.0 10 < th dose independent rect. 15 21
516 7.36 atmosphere 995.0 10 > th dose independent rect. 15 21
546 7.37 temperature 10.0 10 > th dose independent rect. 12 3
548 7.37 atmosphere 995.0 10 > th dose independent rect. 12 3
549 7.37 atmosphere 1015.0 10 < th dose independent rect. 12 3
551 7.37 precipitation 0.1 10 < th dose independent rect. 12 3
554 7.37 wind 7.0 10 < th dose independent rect. 2 10
557 7.37 temperature 10.0 10 > th dose independent rect. 15 21
558 7.37 atmosphere 1015.0 10 < th dose independent rect. 15 21
559 7.37 precipitation 0.1 10 < th dose independent rect. 15 21
560 7.37 precipitation 0.1 10 < th dose dependent rect. 12 3
564 7.37 precipitation 0.1 10 < th dose dependent rect. 15 21
582 7.38 wind 1.0 10 > th dose dependent rect. 12 3
584 7.38 wind 9.0 30 < th dose dependent rect. 12 3
598 7.39 atmosphere 1015.0 90 < th dose independent rect. 15 20
617 7.40 temperature 10.0 1440 > th dose independent rect. 13 3
664 7.40 temperature 10.0 1440 > th dose independent rect. 16 21
690 7.41 wind 1.0 270 > th dose independent rect. 9 4
707 7.41 wind 1.0 270 > th dose independent rect. 9 15
719 7.41 humidity 90.0 10 < th dose dependent rect. 12 3
720 7.41 atmosphere 995.0 10 > th dose dependent rect. 12 3
721 7.41 temperature 10.0 270 > th dose dependent rect. 9 4
724 7.41 temperature 10.0 10 > th dose dependent rect. 3 9
741 7.42 temperature 20.0 10 > th dose independent rect. 3 9
744 7.42 wind 9.0 270 < th dose independent rect. 13 20
745 7.42 atmosphere 1015.0 270 < th dose independent rect. 13 20
753 7.42 humidity 80.0 1440 > th dose dependent rect. 12 1
759 7.42 temperature 10.0 270 > th dose dependent rect. 24 9
772 7.43 wind 9.0 270 < th dose independent rect. 9 4
773 7.43 temperature 10.0 270 > th dose independent rect. 9 4
775 7.43 atmosphere 995.0 270 > th dose independent rect. 9 4
777 7.43 atmosphere 1015.0 270 < th dose independent rect. 9 4
778 7.43 precipitation 0.1 270 < th dose independent rect. 9 4
785 7.43 radiation 20.0 10 < th dose independent rect. 13 10
786 7.43 temperature 10.0 270 > th dose independent rect. 13 20
787 7.43 atmosphere 995.0 270 > th dose independent rect. 13 20
790 7.43 humidity 50.0 30 > th dose independent rect. 15 21
795 7.43 humidity 50.0 30 > th dose independent rect. 13 23
803 7.43 atmosphere 1005.0 10 > th dose dependent rect. 12 3
807 7.43 precipitation 0.1 270 < th dose dependent rect. 9 4
827 7.44 humidity 90.0 270 < th dose independent rect. 9 4
831 7.44 wind 9.0 270 < th dose independent rect. 13 7
832 7.44 atmosphere 995.0 270 > th dose independent rect. 13 7
833 7.44 radiation 20.0 10 < th dose independent rect. 13 8
834 7.44 humidity 60.0 270 > th dose independent rect. 24 9
839 7.44 humidity 80.0 90 < th dose independent rect. 24 15
876 7.45 humidity 80.0 1440 > th dose independent rect. 12 1
891 7.45 wind 9.0 270 < th dose independent rect. 14 5
892 7.45 atmosphere 995.0 270 > th dose independent rect. 14 5
897 7.45 temperature 10.0 270 > th dose independent rect. 13 7
899 7.45 atmosphere 1010.0 270 < th dose independent rect. 13 7
902 7.45 radiation 30.0 90 < th dose independent rect. 14 7
903 7.45 wind 1.0 30 > th dose independent rect. 15 8
905 7.45 atmosphere 995.0 10 > th dose independent rect. 15 8
909 7.45 atmosphere 1015.0 270 < th dose independent rect. 24 9
922 7.45 wind 9.0 270 < th dose independent rect. 20 17
923 7.45 temperature 10.0 270 > th dose independent rect. 20 17
926 7.45 atmosphere 995.0 270 > th dose independent rect. 20 17
927 7.45 precipitation 0.1 270 < th dose independent rect. 20 17
932 7.45 precipitation 0.1 270 < th dose independent rect. 19 19
944 7.45 wind 1.0 90 < th dose dependent rect. 13 1
952 7.45 atmosphere 1015.0 10 < th dose dependent rect. 12 3
965 7.45 temperature 10.0 90 > th dose dependent rect. 24 11
966 7.45 wind 1.0 90 > th dose dependent rect. 23 16
968 7.45 precipitation 0.1 270 < th dose dependent rect. 20 17
969 7.45 precipitation 0.1 270 < th dose dependent rect. 19 19
998 7.46 temperature 10.0 270 > th dose independent rect. 14 5