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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0198900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0211) R2 : 0.000918
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0287 (0.0444) R2dN8 : 0.00119 R2N8 : 0.000918
σ : 0.397
deviance : 72.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.15 0.385 3.28 0.202 0.176 -0.243 -0.19 -1.18 -0.0296 5.92 68 5844 -- --
69.02 0.387 3.27 0.0694 0.175 -0.297 -0.188 -- -0.0709 6.27 80.27 6948 -- --
67.23 0.382 3.28 0.206 0.179 -0.241 -- -1.17 -0.0292 6.01 68.99 5884 -- --
69.09 0.387 3.27 0.0668 0.172 -0.312 -- -- -0.0767 6.53 81 6949 -- --
68.8 0.386 3.29 0.211 -- -0.253 -- -1.15 -0.0323 -- 68.85 5740 -- --
70.55 0.394 3.25 0.0116 0.176 -- -0.209 -- 0.0255 5.85 -- -- -- --
70.65 0.394 3.25 0.0104 0.175 -- -- -- 0.0265 6.05 -- -- -- --
70.64 0.391 3.27 0.0731 -- -0.309 -- -- -0.0733 -- 81 6997 -- --
69.2 0.387 3.27 -- 0.174 -0.291 -- -- -0.0744 6.42 81 6947 -- --
72.25 0.397 3.25 0.0154 -- -- -- -- 0.0304 -- -- -- -- --
70.66 0.393 3.25 -- 0.175 -- -- -- 0.0253 6.05 -- -- -- --
70.76 0.392 3.28 -- -- -0.293 -- -- -0.0754 -- 81 6997 -- --
72.25 0.397 3.25 -- -- -- -- -- 0.0287 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.77 temperature 10.0 1440 > th dose independent rect. 1 1
4 65.77 temperature 30.0 1440 < th dose independent rect. 1 1
8 65.77 humidity 50.0 1440 > th dose independent rect. 1 1
18 65.77 atmosphere 995.0 1440 > th dose independent rect. 1 1
19 65.77 radiation 1.0 1440 < th dose independent rect. 1 1
39 65.77 temperature 10.0 1440 > th dose independent rect. 2 23
42 65.77 radiation 1.0 1440 < th dose dependent rect. 1 1
47 65.82 humidity 90.0 30 < th dose dependent rect. 24 1
48 65.85 humidity 90.0 30 < th dose independent rect. 24 1
49 65.90 wind 1.0 30 < th dose dependent rect. 2 1
50 65.90 temperature 25.0 30 > th dose dependent rect. 24 1
51 65.94 temperature 25.0 30 > th dose independent rect. 24 1
52 65.95 radiation 10.0 30 > th dose independent rect. 7 1
53 65.98 wind 1.0 10 < th dose independent rect. 2 1
71 66.09 atmosphere 1010.0 30 < th dose dependent rect. 2 1
79 66.15 atmosphere 1005.0 10 > th dose dependent rect. 2 1
83 66.16 temperature 25.0 30 < th dose independent rect. 2 1
86 66.17 temperature 10.0 30 > th dose independent rect. 2 1
89 66.17 humidity 50.0 30 > th dose independent rect. 2 1
92 66.17 atmosphere 995.0 30 > th dose independent rect. 2 1
93 66.17 atmosphere 1010.0 30 < th dose independent rect. 2 1
95 66.17 radiation 1.0 30 < th dose independent rect. 2 1
100 66.17 precipitation 0.1 30 < th dose independent rect. 2 1
101 66.17 temperature 10.0 30 > th dose independent rect. 3 23
102 66.17 temperature 10.0 30 > th dose dependent rect. 2 1
103 66.17 humidity 50.0 30 > th dose dependent rect. 2 1
104 66.17 radiation 1.0 30 < th dose dependent rect. 2 1
109 66.17 precipitation 0.1 30 < th dose dependent rect. 2 1
113 66.18 temperature 30.0 30 < th dose dependent rect. 2 1
123 66.20 atmosphere 995.0 30 > th dose independent rect. 3 23
125 66.22 atmosphere 995.0 30 > th dose dependent rect. 2 1
129 66.25 atmosphere 1005.0 30 > th dose independent rect. 2 1
135 66.27 wind 9.0 30 < th dose independent rect. 3 23
175 66.39 wind 1.0 30 > th dose independent rect. 2 1
176 66.39 atmosphere 1010.0 30 < th dose independent rect. 24 1
178 66.42 wind 1.0 30 > th dose independent rect. 24 1
179 66.43 atmosphere 1005.0 30 > th dose independent rect. 24 1
186 66.49 humidity 90.0 90 < th dose independent rect. 24 8
192 66.54 radiation 10.0 10 > th dose independent rect. 16 16
193 66.55 humidity 80.0 14400 < th dose dependent rect. 4 5
195 66.56 wind 7.0 30 < th dose independent rect. 24 1
198 66.56 temperature 30.0 30 < th dose independent rect. 24 1
199 66.56 humidity 50.0 30 > th dose independent rect. 24 1
203 66.56 atmosphere 995.0 30 > th dose independent rect. 24 1
204 66.56 radiation 1.0 30 < th dose independent rect. 24 1
209 66.56 precipitation 0.1 30 < th dose independent rect. 24 1
210 66.56 humidity 80.0 10 < th dose independent rect. 6 2
211 66.56 temperature 10.0 30 > th dose independent rect. 1 23
212 66.56 radiation 1.0 30 < th dose dependent rect. 24 1
217 66.56 precipitation 0.1 30 < th dose dependent rect. 24 1
221 66.59 wind 3.0 30 < th dose independent rect. 24 1
224 66.60 wind 1.0 30 > th dose dependent rect. 24 1
225 66.60 atmosphere 995.0 30 > th dose dependent rect. 24 1
234 66.67 wind 9.0 30 < th dose dependent rect. 24 1
241 66.80 humidity 50.0 30 > th dose dependent rect. 24 1
246 66.83 atmosphere 1015.0 30 < th dose dependent rect. 24 1
253 66.89 atmosphere 995.0 720 > th dose independent rect. 8 7
265 66.95 wind 9.0 30 < th dose independent rect. 1 23
267 66.99 humidity 80.0 10 < th dose independent rect. 2 6
268 66.99 humidity 80.0 10 < th dose independent rect. 24 8
269 66.99 humidity 80.0 14400 < th dose dependent rect. 23 11
282 67.03 humidity 70.0 14400 > th dose independent rect. 8 2
284 67.04 humidity 70.0 14400 > th dose independent rect. 4 6
294 67.05 wind 9.0 720 < th dose independent rect. 15 17
297 67.07 atmosphere 995.0 30 > th dose dependent rect. 3 23
299 67.09 wind 9.0 14400 < th dose independent rect. 1 1
302 67.11 humidity 70.0 14400 < th dose independent rect. 8 2
306 67.12 precipitation 0.1 30 < th dose independent rect. 3 23
307 67.12 precipitation 0.1 30 < th dose dependent rect. 3 23
339 67.30 precipitation 0.1 720 < th dose independent rect. 15 17
342 67.30 precipitation 0.1 720 < th dose dependent rect. 15 17
344 67.33 wind 9.0 720 < th dose independent rect. 20 7
346 67.33 atmosphere 995.0 720 > th dose independent rect. 23 16
360 67.40 wind 3.0 30 < th dose dependent rect. 24 3
361 67.41 wind 9.0 4320 < th dose independent rect. 3 1
366 67.44 humidity 90.0 90 < th dose independent rect. 24 21
367 67.44 radiation 1.0 43200 < th dose dependent rect. 3 1
376 67.46 humidity 90.0 720 < th dose independent rect. 24 1
380 67.47 humidity 70.0 1440 < th dose independent rect. 10 1
385 67.48 temperature 10.0 720 > th dose independent rect. 8 7
386 67.48 atmosphere 1015.0 720 < th dose independent rect. 8 7
388 67.48 temperature 10.0 720 > th dose independent rect. 15 17
392 67.49 temperature 10.0 720 > th dose independent rect. 20 7
393 67.49 temperature 30.0 720 < th dose independent rect. 20 7
394 67.49 humidity 50.0 720 > th dose independent rect. 20 7
398 67.49 atmosphere 995.0 720 > th dose independent rect. 20 7
399 67.49 radiation 1.0 720 < th dose independent rect. 20 7
410 67.49 temperature 10.0 720 > th dose independent rect. 3 17
411 67.49 radiation 1.0 720 < th dose dependent rect. 20 7
419 67.50 humidity 80.0 720 > th dose dependent rect. 3 1
421 67.51 humidity 70.0 1440 > th dose independent rect. 10 1
428 67.53 humidity 50.0 14400 > th dose dependent rect. 8 1
441 67.54 humidity 80.0 14400 < th dose dependent sin 8 NA
447 67.55 humidity 90.0 4320 < th dose independent rect. 4 5
450 67.55 humidity 90.0 90 < th dose independent rect. 24 18
454 67.55 humidity 90.0 90 < th dose dependent rect. 2 6
456 67.56 temperature 10.0 1440 > th dose independent rect. 3 1
459 67.56 temperature 30.0 1440 < th dose independent rect. 3 1
463 67.56 humidity 50.0 1440 > th dose independent rect. 3 1
472 67.56 atmosphere 995.0 1440 > th dose independent rect. 3 1
473 67.56 radiation 1.0 1440 < th dose independent rect. 3 1
493 67.56 temperature 10.0 1440 > th dose independent rect. 4 23
515 67.57 humidity 70.0 4320 > th dose dependent rect. 3 11
521 67.59 humidity 90.0 90 < th dose dependent rect. 24 8
526 67.59 humidity 80.0 30 > th dose dependent rect. 3 23
528 67.60 humidity 70.0 4320 > th dose dependent rect. 3 7
531 67.61 humidity 60.0 14400 > th dose independent rect. 11 1
549 67.63 radiation 40.0 720 < th dose independent rect. 15 17
550 67.63 humidity 90.0 10 < th dose dependent rect. 7 1
551 67.64 humidity 60.0 14400 < th dose independent rect. 11 1
558 67.65 precipitation 0.1 720 < th dose independent rect. 15 8
560 67.65 precipitation 0.1 720 < th dose dependent rect. 15 8
579 67.68 humidity 70.0 4320 > th dose dependent sin 4 NA
621 67.73 humidity 60.0 14400 < th dose independent rect. 10 3
623 67.73 humidity 90.0 720 < th dose independent rect. 24 8
628 67.74 precipitation 0.1 720 < th dose independent rect. 20 7
640 67.74 precipitation 0.1 720 < th dose dependent rect. 20 7
650 67.75 humidity 90.0 90 < th dose independent rect. 2 1
664 67.75 atmosphere 1015.0 90 < th dose dependent rect. 6 21
667 67.76 humidity 50.0 30 > th dose independent rect. 3 23
717 67.79 humidity 90.0 4320 > th dose independent rect. 5 4
754 67.81 humidity 80.0 4320 < th dose independent rect. 3 16
774 67.82 precipitation 0.1 720 < th dose independent rect. 8 7
782 67.82 precipitation 0.1 720 < th dose dependent rect. 8 7
794 67.83 atmosphere 1015.0 720 < th dose dependent rect. 6 2
811 67.84 temperature 25.0 270 < th dose independent rect. 19 9
830 67.84 atmosphere 995.0 30 > th dose dependent rect. 8 23
832 67.85 humidity 70.0 4320 > th dose independent rect. 14 1
836 67.85 humidity 70.0 4320 > th dose independent rect. 8 10
840 67.85 humidity 60.0 14400 < th dose independent rect. 19 18
863 67.86 humidity 70.0 4320 > th dose independent rect. 10 8
879 67.86 humidity 60.0 14400 < th dose dependent rect. 12 1
916 67.87 atmosphere 1015.0 720 < th dose independent rect. 3 17
918 67.87 atmosphere 1005.0 30 > th dose independent rect. 8 18
948 67.88 humidity 70.0 4320 > th dose independent rect. 14 4
997 67.89 wind 9.0 720 < th dose independent rect. 15 8