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Os11g0198200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.58 (0.0255) R2 : 0.797
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.8 (0.0621) R2dC : 0.393 R2C : 0.502
β3 : 1.67 (0.081) R2dE : 0.2 R2E : 0.334
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.597 (0.0539) R2dN8 : 0.0716 R2N8 : 0.0826
σ : 0.478
deviance : 105.25
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_____
C
peak time of C : 0.514
E
wheather : temperature
threshold : 14.74
memory length : 250
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.35
open length of G : 4.22

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.6 0.469 8.58 -0.225 1.79 1.67 0.87 0.347 0.575 0.474 14.74 269 1.18 4.15
99.63 0.465 8.58 -0.254 1.8 1.7 0.914 -- 0.566 0.462 14.74 259 1.27 4.23
102.69 0.472 8.58 -0.227 1.79 1.68 -- 0.722 0.574 0.493 14.92 262 1.24 4.21
103.09 0.473 8.58 -0.28 1.8 1.7 -- -- 0.567 0.49 15 251 1.32 4.25
263.15 0.756 8.55 -0.206 -- 2.14 -- 0.752 0.577 -- 10.81 183 0.015 5.67
146.98 0.568 8.54 -0.138 2.32 -- 1.13 -- 0.69 2.18 -- -- -- --
151.73 0.577 8.54 -0.17 2.32 -- -- -- 0.684 2.19 -- -- -- --
261.88 0.754 8.56 -0.255 -- 2.12 -- -- 0.571 -- 12.44 145 0.000151 5.93
105.25 0.478 8.58 -- 1.8 1.67 -- -- 0.597 0.514 14.74 250 1.35 4.22
473.49 1.02 8.52 -0.0727 -- -- -- -- 0.74 -- -- -- -- --
152.49 0.578 8.54 -- 2.32 -- -- -- 0.703 2.19 -- -- -- --
263.72 0.756 8.56 -- -- 2.1 -- -- 0.579 -- 11.68 145 0.0167 5.93
473.63 1.02 8.52 -- -- -- -- -- 0.748 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.94 temperature 15.0 270 > th dose dependent rect. 1 4
7 102.48 temperature 20.0 270 > th dose independent rect. 1 4
14 104.62 humidity 70.0 270 > th dose dependent rect. 1 4
17 105.26 wind 3.0 90 < th dose dependent rect. 3 4
21 105.40 humidity 70.0 90 > th dose dependent rect. 3 4
39 106.41 temperature 15.0 10 > th dose dependent rect. 3 4
44 106.53 radiation 20.0 90 < th dose dependent rect. 3 14
45 106.59 wind 9.0 270 < th dose dependent rect. 1 4
51 106.82 radiation 20.0 90 < th dose dependent rect. 3 16
55 107.06 temperature 20.0 10 > th dose independent rect. 3 4
56 107.08 humidity 80.0 270 > th dose independent rect. 1 4
57 107.08 radiation 20.0 90 < th dose dependent rect. 3 8
58 107.12 radiation 10.0 90 < th dose independent rect. 3 8
64 107.31 precipitation 0.1 270 < th dose independent rect. 5 20
65 107.31 precipitation 0.1 270 < th dose dependent rect. 5 20
66 107.36 radiation 20.0 90 < th dose dependent rect. 3 12
67 107.37 radiation 10.0 90 < th dose independent rect. 3 16
75 107.61 radiation 10.0 90 < th dose independent rect. 3 14
79 107.68 precipitation 0.1 270 < th dose independent rect. 1 4
81 107.68 precipitation 0.1 270 < th dose dependent rect. 1 4
86 107.72 humidity 80.0 90 > th dose dependent rect. 3 6
91 107.84 radiation 40.0 270 < th dose independent rect. 14 15
93 107.90 radiation 1.0 270 < th dose independent rect. 1 4
99 107.91 wind 9.0 270 < th dose independent rect. 1 4
100 107.91 temperature 10.0 270 > th dose independent rect. 1 4
102 107.91 temperature 30.0 270 < th dose independent rect. 1 4
103 107.91 humidity 50.0 270 > th dose independent rect. 1 4
106 107.91 atmosphere 995.0 270 > th dose independent rect. 1 4
107 107.91 atmosphere 1010.0 270 < th dose independent rect. 1 4
112 107.91 wind 9.0 270 < th dose independent rect. 5 20
113 107.91 temperature 10.0 270 > th dose independent rect. 5 20
114 107.91 radiation 30.0 270 < th dose dependent rect. 1 4
116 107.92 radiation 10.0 270 < th dose dependent rect. 1 4
141 108.12 radiation 10.0 270 < th dose dependent rect. 1 14
142 108.13 radiation 10.0 90 < th dose independent rect. 3 12
149 108.24 radiation 20.0 90 < th dose dependent rect. 3 10
152 108.29 wind 3.0 90 < th dose independent rect. 3 4
155 108.32 radiation 20.0 90 < th dose dependent rect. 3 6
167 108.45 wind 3.0 270 < th dose independent rect. 1 4
190 108.78 humidity 80.0 90 > th dose dependent rect. 3 16
201 108.94 precipitation 0.1 90 < th dose independent rect. 7 20
202 108.94 precipitation 0.1 90 < th dose dependent rect. 7 20
204 108.98 radiation 10.0 90 < th dose independent rect. 3 10
216 109.13 humidity 80.0 90 > th dose dependent rect. 3 14
217 109.14 radiation 40.0 90 < th dose dependent rect. 13 18
222 109.24 radiation 10.0 270 < th dose dependent rect. 1 8
223 109.25 radiation 10.0 90 < th dose independent rect. 3 18
245 109.44 temperature 10.0 90 > th dose independent rect. 7 20
252 109.47 humidity 80.0 90 > th dose dependent rect. 3 18
254 109.49 wind 9.0 90 < th dose independent rect. 7 20
265 109.57 radiation 30.0 90 < th dose dependent rect. 3 18
269 109.61 radiation 10.0 10 < th dose independent rect. 3 19
276 109.68 radiation 1.0 270 < th dose dependent rect. 5 20
324 110.09 precipitation 0.1 270 < th dose independent rect. 5 9
326 110.09 precipitation 0.1 270 < th dose dependent rect. 5 9
330 110.13 temperature 15.0 270 > th dose independent rect. 14 15
374 110.55 temperature 10.0 270 > th dose independent rect. 5 9
375 110.55 atmosphere 995.0 270 > th dose independent rect. 5 9
376 110.55 atmosphere 1015.0 270 < th dose independent rect. 5 9
384 110.58 radiation 40.0 90 < th dose dependent rect. 15 16
388 110.62 atmosphere 995.0 270 > th dose independent rect. 14 15
397 110.70 wind 9.0 270 < th dose independent rect. 5 9
398 110.70 atmosphere 1000.0 270 > th dose independent rect. 1 18
405 110.77 radiation 10.0 10 < th dose independent rect. 3 7
439 111.10 temperature 20.0 270 > th dose independent rect. 1 18
453 111.21 temperature 20.0 90 > th dose independent rect. 3 18
463 111.25 radiation 20.0 10 < th dose dependent rect. 4 18
481 111.34 wind 9.0 270 < th dose independent rect. 14 15
551 111.69 radiation 10.0 10 < th dose independent rect. 3 11
561 111.70 radiation 10.0 10 < th dose independent rect. 3 5
568 111.74 radiation 10.0 10 < th dose independent rect. 3 13
602 111.94 temperature 20.0 90 > th dose independent rect. 3 16
734 112.38 atmosphere 1015.0 1440 < th dose independent rect. 3 5
745 112.43 atmosphere 995.0 270 > th dose dependent rect. 2 3
752 112.45 atmosphere 1000.0 90 > th dose independent rect. 3 18
767 112.52 atmosphere 1000.0 90 > th dose independent rect. 3 16
788 112.60 radiation 40.0 10 < th dose dependent rect. 12 19
792 112.64 radiation 20.0 90 < th dose dependent sin 3 NA
834 112.90 wind 1.0 90 > th dose independent rect. 7 20
839 112.92 humidity 50.0 270 > th dose independent rect. 5 20
858 112.98 humidity 80.0 10 > th dose independent rect. 3 4
868 113.03 wind 1.0 270 > th dose independent rect. 5 20
883 113.09 precipitation 0.1 10 < th dose independent rect. 3 4
886 113.09 precipitation 0.1 10 < th dose dependent rect. 3 4
894 113.12 precipitation 0.1 10 < th dose independent rect. 7 20
896 113.12 precipitation 0.1 10 < th dose dependent rect. 7 20
938 113.33 precipitation 0.1 270 < th dose independent rect. 14 15
939 113.33 precipitation 0.1 270 < th dose dependent rect. 14 15
945 113.36 wind 9.0 90 < th dose dependent rect. 15 16
981 113.49 wind 7.0 10 < th dose independent rect. 3 4
997 113.55 temperature 10.0 10 > th dose independent rect. 3 4
999 113.55 temperature 30.0 10 < th dose independent rect. 3 4
1000 113.55 humidity 50.0 10 > th dose independent rect. 3 4