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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0196400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.09 (0.0416) R2 : 0.746
β1 : 2.31 (0.153) R2dD : 0.133 R2D : 0.105
β2 : 4.26 (0.135) R2dC : 0.865 R2C : 0.148
β3 : -2.66 (0.122) R2dE : 0.415 R2E : -0.296
β4 : 6.71 (0.614) R2dD*C : 0.103 R2D*C : 0.032
β5 : -3.15 (0.483) R2dD*E : 0.0366 R2D*E : -0.05
γ1 : 0.226 (0.0887) R2dN8 : 0.00487 R2N8 : -0.0099
σ : 0.784
deviance : 278.37
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_____
C
peak time of C : 18.5
E
wheather : radiation
threshold : 22.26
memory length : 292
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 8.04

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
278.37 0.784 4.09 2.31 4.26 -2.66 6.71 -3.15 0.226 18.5 22.26 292 15 8.04
300.17 0.807 4.11 2.07 3.83 -2.05 4.92 -- 0.135 18 20.23 293 15 8.1
350.81 0.872 4.09 2.16 4.24 -2.63 -- -0.511 0.215 18.4 20.05 317 14.8 8.04
349.73 0.871 4.1 2.14 4.16 -2.58 -- -- 0.204 18.4 22.09 314 14.8 8.19
324.05 0.838 3.98 2.38 -- -3.56 -- -1.97 0.342 -- 118.8 1078 15.4 7.07
364.14 0.895 4.02 2.21 3.14 -- 4.77 -- 0.249 16.2 -- -- -- --
427.86 0.969 4.01 2.26 3.17 -- -- -- 0.275 16.1 -- -- -- --
362.43 0.887 3.98 2.21 -- -3.32 -- -- 0.232 -- 121.1 1079 15 7.9
471.41 1.01 4.13 -- 4.23 -2.83 -- -- 0.0521 18.5 22.12 326 14.9 8.02
974.09 1.46 3.99 2.14 -- -- -- -- 0.191 -- -- -- -- --
562.95 1.11 4.06 -- 3.13 -- -- -- 0.0231 16.1 -- -- -- --
491.31 1.03 3.98 -- -- -3.26 -- -- 0.0812 -- 133.3 1085 15 8.03
1094.36 1.54 4.05 -- -- -- -- -- -0.0462 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 280.82 radiation 20.0 270 < th dose independent rect. 15 8
2 281.65 radiation 40.0 270 < th dose dependent rect. 15 8
4 282.60 temperature 30.0 270 < th dose independent rect. 17 17
7 284.19 wind 7.0 270 < th dose independent rect. 11 17
10 284.57 wind 7.0 270 < th dose independent rect. 10 7
19 285.78 temperature 30.0 270 < th dose independent rect. 16 7
23 287.07 humidity 50.0 270 > th dose independent rect. 16 7
27 287.37 temperature 10.0 270 > th dose dependent rect. 10 7
28 287.52 humidity 50.0 270 > th dose independent rect. 17 17
31 288.17 wind 7.0 270 < th dose independent rect. 23 17
35 288.53 radiation 1.0 270 < th dose independent rect. 22 13
37 288.62 radiation 1.0 270 > th dose independent rect. 10 9
49 288.82 temperature 10.0 270 > th dose dependent rect. 11 17
57 289.44 atmosphere 995.0 270 > th dose independent rect. 17 17
59 289.62 radiation 1.0 270 < th dose dependent rect. 22 13
60 289.69 temperature 15.0 270 > th dose independent rect. 6 16
66 289.84 atmosphere 1015.0 270 < th dose independent rect. 23 17
71 290.07 atmosphere 995.0 270 > th dose independent rect. 16 7
80 290.55 temperature 10.0 270 > th dose independent rect. 10 7
81 290.55 atmosphere 1015.0 270 < th dose independent rect. 10 7
82 290.55 temperature 10.0 270 > th dose independent rect. 17 17
84 290.61 radiation 1.0 270 < th dose independent rect. 22 9
85 290.65 temperature 10.0 270 > th dose independent rect. 16 7
87 290.65 temperature 10.0 270 > th dose independent rect. 23 17
89 290.82 temperature 15.0 270 > th dose independent rect. 4 7
94 291.05 temperature 15.0 10 > th dose dependent rect. 12 8
95 291.06 precipitation 0.1 270 < th dose independent rect. 23 17
96 291.06 precipitation 0.1 270 < th dose dependent rect. 23 17
97 291.07 precipitation 0.1 270 < th dose independent rect. 10 7
98 291.07 precipitation 0.1 270 < th dose dependent rect. 10 7
105 291.34 wind 9.0 270 < th dose independent rect. 17 17
107 291.42 precipitation 0.1 270 < th dose independent rect. 9 9
108 291.42 precipitation 0.1 270 < th dose dependent rect. 9 9
130 292.05 wind 9.0 270 < th dose independent rect. 4 7
131 292.05 wind 9.0 270 < th dose independent rect. 16 7
141 292.22 atmosphere 995.0 270 > th dose independent rect. 4 7
142 292.22 atmosphere 1015.0 270 < th dose independent rect. 4 7
143 292.22 temperature 10.0 270 > th dose independent rect. 11 17
146 292.25 precipitation 0.1 270 < th dose independent rect. 4 7
147 292.25 precipitation 0.1 270 < th dose dependent rect. 4 7
149 292.36 radiation 1.0 270 < th dose dependent rect. 22 9
150 292.38 precipitation 0.1 270 < th dose independent rect. 16 7
151 292.38 precipitation 0.1 270 < th dose dependent rect. 16 7
156 292.48 precipitation 0.1 270 < th dose independent rect. 17 17
157 292.48 precipitation 0.1 270 < th dose dependent rect. 17 17
158 292.53 wind 1.0 270 > th dose independent rect. 10 7
168 292.76 temperature 10.0 10 > th dose dependent rect. 12 18
187 293.43 wind 7.0 270 < th dose independent rect. 22 7
188 293.43 atmosphere 995.0 270 > th dose independent rect. 18 15
190 293.47 temperature 10.0 270 > th dose independent rect. 22 7
191 293.47 temperature 30.0 270 < th dose independent rect. 22 7
192 293.47 humidity 50.0 270 > th dose independent rect. 22 7
195 293.47 atmosphere 995.0 270 > th dose independent rect. 22 7
196 293.47 radiation 20.0 270 < th dose independent rect. 22 7
200 293.47 radiation 30.0 270 < th dose dependent rect. 22 7
203 293.49 wind 1.0 270 > th dose independent rect. 16 7
207 293.51 precipitation 0.1 270 < th dose independent rect. 22 7
208 293.51 precipitation 0.1 270 < th dose dependent rect. 22 7
225 293.75 temperature 10.0 270 > th dose independent rect. 9 9
226 293.75 atmosphere 1015.0 270 < th dose independent rect. 9 9
227 293.75 temperature 10.0 270 > th dose independent rect. 18 15
235 293.90 wind 9.0 270 < th dose independent rect. 18 15
238 293.95 precipitation 0.1 270 < th dose independent rect. 5 17
239 293.95 precipitation 0.1 270 < th dose dependent rect. 5 17
249 294.13 precipitation 0.1 270 < th dose independent rect. 18 15
250 294.13 precipitation 0.1 270 < th dose dependent rect. 18 15
252 294.16 humidity 50.0 270 > th dose dependent rect. 22 7
285 294.56 radiation 40.0 270 < th dose dependent rect. 5 18
297 294.72 atmosphere 1015.0 270 < th dose independent rect. 22 7
298 294.73 humidity 50.0 270 > th dose independent rect. 4 7
314 294.96 radiation 40.0 270 < th dose independent rect. 17 17
317 294.98 atmosphere 995.0 270 > th dose independent rect. 5 17
353 295.71 radiation 40.0 270 < th dose independent rect. 18 15
365 295.84 radiation 10.0 270 < th dose dependent rect. 9 14
368 295.92 precipitation 0.1 270 < th dose independent rect. 11 17
369 295.92 precipitation 0.1 270 < th dose dependent rect. 11 17
371 296.03 temperature 30.0 270 < th dose independent rect. 5 17
380 296.15 atmosphere 995.0 270 > th dose independent rect. 23 17
432 296.85 radiation 40.0 270 < th dose independent rect. 5 18
471 297.57 wind 9.0 270 < th dose independent rect. 5 17
473 297.67 radiation 1.0 90 < th dose independent rect. 11 14
474 297.70 radiation 1.0 90 < th dose independent rect. 8 17
547 298.27 wind 1.0 270 > th dose independent rect. 9 9
552 298.35 radiation 1.0 270 < th dose dependent sin 8 NA
607 298.79 radiation 20.0 270 < th dose independent rect. 5 18
625 299.04 radiation 40.0 270 < th dose independent rect. 5 6
636 299.17 atmosphere 995.0 270 > th dose independent rect. 24 15
644 299.21 radiation 1.0 270 < th dose independent sin 8 NA
645 299.21 radiation 1.0 90 < th dose dependent rect. 7 18
671 299.51 temperature 20.0 10 > th dose independent rect. 7 5
675 299.54 radiation 1.0 270 > th dose independent sin 21 NA
677 299.54 wind 9.0 270 < th dose dependent rect. 22 7
688 299.68 humidity 90.0 270 < th dose independent rect. 11 6
703 300.05 radiation 1.0 270 < th dose independent sin 20 NA
758 300.65 temperature 30.0 270 < th dose independent rect. 4 7
769 300.66 radiation 10.0 270 < th dose dependent sin 19 NA
780 300.82 atmosphere 995.0 270 > th dose independent rect. 10 7
795 301.00 atmosphere 1015.0 270 < th dose independent rect. 5 17
802 301.08 wind 7.0 10 < th dose independent rect. 7 5
813 301.18 temperature 10.0 270 > th dose dependent rect. 4 7
821 301.28 temperature 25.0 30 > th dose independent rect. 12 8
827 301.36 wind 7.0 30 < th dose independent rect. 12 19
830 301.38 atmosphere 1015.0 270 < th dose independent rect. 11 17
840 301.47 wind 9.0 270 < th dose dependent rect. 5 6
968 302.62 radiation 1.0 270 > th dose independent rect. 4 7