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Os11g0194800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA-directed RNA polymerase II 7.6 kDa polypeptide (EC 2.7.7.6) (RPB10) (RPB7.6).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.023) R2 : 0.803
β1 : 2.9 (0.087) R2dD : 0.537 R2D : 0.37
β2 : 1.6 (0.0601) R2dC : 0.309 R2C : 0.302
β3 : -0.788 (0.0712) R2dE : 0.0581 R2E : -0.0169
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.52 (0.0498) R2dN8 : 0.0651 R2N8 : -0.0348
σ : 0.429
deviance : 84.67
__
_____
C
peak time of C : 17.6
E
wheather : temperature
threshold : 24.7
memory length : 1263
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.51 0.429 10.3 3.09 1.59 -0.86 0.651 0.727 0.576 17.6 24.36 1243 -- --
83.73 0.426 10.3 2.9 1.6 -0.795 0.59 -- 0.519 17.6 24.47 1258 -- --
84.54 0.428 10.3 3.09 1.59 -0.86 -- 0.685 0.571 17.6 24.54 1258 -- --
84.67 0.429 10.3 2.9 1.6 -0.788 -- -- 0.52 17.6 24.7 1263 -- --
214.79 0.683 10.2 3 -- -0.987 -- 0.334 0.547 -- 24.1 1286 -- --
104.8 0.48 10.3 2.65 1.66 -- 0.77 -- 0.413 17.3 -- -- -- --
106.28 0.483 10.3 2.65 1.67 -- -- -- 0.416 17.4 -- -- -- --
214.82 0.683 10.2 2.94 -- -1 -- -- 0.539 -- 24.1 1278 -- --
288.6 0.791 10.4 -- 1.49 0.415 -- -- 0.0783 17.7 24.1 14 -- --
251.16 0.741 10.3 2.59 -- -- -- -- 0.375 -- -- -- -- --
291.4 0.799 10.4 -- 1.62 -- -- -- 0.121 17.4 -- -- -- --
366.07 0.891 10.4 -- -- 1.46 -- -- -0.0257 -- 24.3 263 -- --
428.58 0.966 10.3 -- -- -- -- -- 0.0873 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.74 temperature 20.0 90 > th dose independent rect. 15 18
4 81.14 temperature 20.0 270 > th dose independent rect. 13 18
6 81.25 wind 9.0 43200 > th dose dependent rect. 20 11
18 82.06 wind 9.0 43200 > th dose independent rect. 20 12
21 82.14 wind 9.0 43200 < th dose independent rect. 20 13
26 82.32 wind 9.0 43200 > th dose dependent rect. 20 7
27 82.32 temperature 15.0 270 > th dose dependent rect. 14 17
28 82.34 wind 9.0 43200 > th dose dependent rect. 20 4
30 82.36 humidity 80.0 14400 > th dose independent rect. 17 3
41 82.50 humidity 80.0 14400 < th dose independent rect. 17 2
63 82.80 wind 9.0 43200 > th dose independent rect. 19 17
66 82.86 wind 5.0 43200 > th dose dependent rect. 6 1
67 82.86 humidity 80.0 14400 > th dose dependent rect. 21 2
71 82.95 temperature 15.0 270 > th dose dependent rect. 12 20
73 83.01 wind 9.0 43200 > th dose independent rect. 20 5
81 83.07 temperature 30.0 270 < th dose dependent rect. 19 7
84 83.10 wind 9.0 43200 > th dose independent rect. 20 7
113 83.36 wind 9.0 43200 < th dose independent rect. 19 5
121 83.42 precipitation 0.1 43200 > th dose dependent rect. 16 2
122 83.42 wind 7.0 43200 > th dose dependent rect. 19 19
138 83.60 radiation 20.0 1440 < th dose independent rect. 16 1
145 83.65 wind 5.0 43200 > th dose dependent rect. 9 1
151 83.73 radiation 20.0 1440 < th dose independent rect. 16 13
163 83.82 humidity 80.0 14400 < th dose dependent rect. 18 1
164 83.83 radiation 20.0 1440 < th dose independent rect. 16 4
166 83.83 temperature 25.0 1440 > th dose dependent rect. 15 15
169 83.84 precipitation 0.1 43200 > th dose independent rect. 17 1
170 83.84 precipitation 0.1 43200 < th dose independent rect. 17 1
172 83.84 precipitation 0.1 43200 < th dose dependent rect. 17 1
194 83.93 radiation 20.0 1440 < th dose independent rect. 16 6
195 83.93 temperature 15.0 720 > th dose dependent rect. 18 6
200 83.94 temperature 25.0 1440 > th dose dependent sin 14 NA
210 83.98 wind 5.0 43200 > th dose independent rect. 6 1
232 84.03 radiation 1.0 43200 < th dose dependent rect. 19 5
240 84.06 wind 5.0 43200 < th dose independent rect. 6 1
248 84.07 wind 9.0 43200 > th dose dependent rect. 17 15
249 84.07 temperature 25.0 1440 > th dose dependent rect. 11 18
253 84.08 radiation 30.0 14400 > th dose independent rect. 7 1
278 84.10 wind 9.0 43200 < th dose independent rect. 20 1
299 84.17 atmosphere 995.0 90 > th dose dependent rect. 9 18
362 84.31 wind 7.0 43200 > th dose independent rect. 6 5
368 84.33 wind 9.0 43200 > th dose independent rect. 20 1
369 84.33 temperature 25.0 1440 < th dose independent rect. 6 1
370 84.33 temperature 25.0 1440 > th dose dependent rect. 18 1
375 84.34 wind 5.0 43200 > th dose dependent rect. 6 8
378 84.35 temperature 25.0 1440 > th dose dependent rect. 18 3
391 84.39 humidity 70.0 14400 > th dose dependent rect. 18 1
405 84.42 temperature 20.0 720 > th dose dependent rect. 20 3
419 84.44 wind 9.0 43200 > th dose dependent sin 12 NA
420 84.44 humidity 50.0 14400 > th dose dependent rect. 18 1
434 84.47 wind 3.0 43200 > th dose dependent rect. 4 11
459 84.52 wind 3.0 43200 < th dose independent rect. 4 1
462 84.53 temperature 25.0 1440 > th dose independent rect. 6 1
476 84.56 wind 3.0 43200 > th dose dependent sin 4 NA
482 84.58 wind 1.0 43200 > th dose dependent rect. 4 6
491 84.61 temperature 25.0 1440 > th dose dependent rect. 16 1
494 84.61 wind 5.0 43200 > th dose dependent rect. 6 6
519 84.64 temperature 25.0 1440 > th dose dependent rect. 14 23
520 84.65 wind 3.0 43200 > th dose independent rect. 4 1
529 84.66 wind 7.0 43200 < th dose independent rect. 6 5
559 84.70 temperature 25.0 1440 > th dose dependent no NA NA
585 84.73 temperature 15.0 10 > th dose dependent sin 11 NA
586 84.73 wind 9.0 43200 < th dose dependent rect. 7 3
593 84.73 temperature 25.0 1440 > th dose dependent rect. 1 23
596 84.73 temperature 25.0 1440 > th dose dependent rect. 22 23
603 84.74 temperature 15.0 10 > th dose dependent rect. 15 18
604 84.74 atmosphere 995.0 10 > th dose dependent rect. 9 19
629 84.76 temperature 25.0 1440 > th dose dependent rect. 18 23
638 84.77 temperature 25.0 1440 > th dose dependent rect. 20 23
666 84.80 temperature 30.0 270 < th dose dependent rect. 21 4
677 84.81 radiation 10.0 1440 < th dose dependent rect. 18 11
685 84.82 temperature 30.0 10 < th dose dependent sin 11 NA
686 84.82 atmosphere 995.0 43200 < th dose dependent rect. 14 1
709 84.85 temperature 30.0 720 < th dose dependent rect. 15 12
720 84.87 temperature 30.0 10 < th dose dependent rect. 20 8
728 84.88 radiation 10.0 14400 > th dose dependent rect. 17 1
756 84.90 wind 5.0 43200 > th dose independent rect. 4 12
768 84.90 atmosphere 995.0 270 > th dose dependent rect. 7 19
789 84.92 temperature 30.0 720 < th dose dependent sin 15 NA
790 84.92 radiation 10.0 1440 > th dose dependent rect. 16 1
808 84.94 wind 9.0 43200 > th dose independent sin 10 NA
825 84.95 wind 5.0 43200 < th dose independent rect. 4 12
851 84.97 humidity 90.0 14400 < th dose independent rect. 21 2
865 84.98 radiation 20.0 4320 < th dose independent rect. 15 17
923 85.03 temperature 20.0 1440 > th dose dependent rect. 6 11
948 85.05 wind 9.0 43200 < th dose dependent rect. 4 6
967 85.06 wind 7.0 43200 > th dose dependent rect. 2 12
999 85.08 wind 7.0 43200 > th dose dependent rect. 24 14