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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0186900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4) (ACC oxidase) (Ethylene-forming enzyme) (EFE).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0276) R2 : 0.187
β1 : -0.127 (0.102) R2dD : 0.00289 R2D : -0.00487
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.4 (0.303) R2dE : 0.153 R2E : -0.0397
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -19.4 (2.01) R2dD*E : 0.23 R2D*E : 0.0325
γ1 : 0.00646 (0.0589) R2dN8 : 2.52e-05 R2N8 : -0.00103
σ : 0.515
deviance : 122.36
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 74.85
memory length : 53
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.2
open length of G : 1.64

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
122.79 0.521 2.92 -0.31 0.0694 2.36 -0.389 -22.3 0.00147 6.37 76.02 42 18.6 2.22
144.88 0.561 2.88 0.0121 0.0832 1.21 0.0725 -- -0.0064 4.18 77.22 51 19.6 0.42
122.09 0.515 2.91 -0.166 0.0627 2.6 -- -21.5 0.00457 4.29 74.21 60 19.1 0.747
144.86 0.561 2.88 0.0139 0.0944 1.29 -- -- -0.00637 4.49 77 52 19.6 0.761
122.36 0.515 2.9 -0.127 -- 2.4 -- -19.4 0.00646 -- 74.85 53 19.2 1.64
150.15 0.574 2.89 0.0174 0.0711 -- 0.0229 -- -0.0233 1.79 -- -- -- --
150.15 0.574 2.89 0.0167 0.071 -- -- -- -0.0234 1.7 -- -- -- --
145.33 0.561 2.88 0.0172 -- 1.25 -- -- -0.00465 -- 76.85 55 19.6 1.19
144.86 0.561 2.88 -- 0.0947 1.29 -- -- -0.00786 4.48 76.99 53 19.6 0.989
150.46 0.573 2.89 0.0196 -- -- -- -- -0.0218 -- -- -- -- --
150.16 0.573 2.89 -- 0.0713 -- -- -- -0.0252 1.71 -- -- -- --
145.33 0.561 2.88 -- -- 1.25 -- -- -0.00665 -- 76.82 54 19.6 1.26
150.47 0.573 2.89 -- -- -- -- -- -0.024 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.62 humidity 80 30 < th dose dependent rect. 18 2
23 131.90 humidity 80 30 < th dose dependent rect. 19 11
26 131.95 humidity 80 30 < th dose dependent rect. 19 9
71 135.94 radiation 20 270 > th dose dependent rect. 16 1
86 136.33 humidity 60 270 < th dose independent rect. 16 1
115 137.30 humidity 60 270 < th dose dependent rect. 16 1
116 137.37 humidity 80 10 < th dose independent rect. 19 1
140 137.76 atmosphere 1005 90 < th dose independent rect. 18 1
156 140.23 atmosphere 1005 720 < th dose dependent rect. 8 4
166 140.60 atmosphere 1005 720 < th dose dependent rect. 11 1
214 141.83 atmosphere 1000 1440 < th dose independent rect. 19 4
218 141.88 atmosphere 1010 90 < th dose dependent rect. 18 1
219 141.91 atmosphere 1015 720 < th dose dependent rect. 8 3
226 141.97 atmosphere 1000 1440 < th dose independent rect. 20 1
227 142.06 atmosphere 1000 1440 > th dose independent rect. 20 2
233 142.11 atmosphere 1000 1440 > th dose independent rect. 19 6
253 142.26 atmosphere 995 4320 > th dose independent rect. 21 9
255 142.28 wind 3 30 > th dose independent rect. 19 1
256 142.28 radiation 40 90 > th dose independent rect. 15 1
273 142.28 radiation 40 90 > th dose dependent rect. 15 1
294 142.33 atmosphere 995 4320 > th dose independent rect. 21 11
296 142.35 atmosphere 995 4320 > th dose independent rect. 24 11
299 142.39 atmosphere 995 4320 > th dose independent rect. 24 6
302 142.41 atmosphere 995 4320 > th dose independent rect. 24 8
304 142.43 atmosphere 995 4320 > th dose independent rect. 21 14
310 142.47 wind 9 4320 > th dose independent rect. 23 1
311 142.47 atmosphere 995 4320 < th dose independent rect. 1 1
463 142.47 wind 9 4320 > th dose dependent rect. 23 1
464 142.47 atmosphere 995 4320 < th dose dependent rect. 1 1
471 142.47 atmosphere 995 4320 < th dose dependent rect. 21 1
627 142.55 atmosphere 1000 1440 < th dose independent rect. 12 1
629 142.56 atmosphere 1005 720 < th dose dependent sin 3 NA
633 142.58 atmosphere 1005 270 < th dose dependent rect. 16 1
639 142.62 atmosphere 995 4320 > th dose independent rect. 21 6
643 142.63 atmosphere 1005 720 < th dose dependent rect. 24 16
684 142.78 atmosphere 1000 1440 < th dose dependent rect. 18 1
693 142.79 atmosphere 1000 1440 < th dose dependent rect. 12 14
724 142.85 atmosphere 1000 1440 < th dose dependent rect. 12 10
727 142.86 atmosphere 995 4320 < th dose dependent sin 8 NA
778 142.92 atmosphere 1000 1440 < th dose dependent sin 18 NA
981 143.07 temperature 20 10 > th dose independent rect. 19 1
990 143.07 atmosphere 1000 1440 < th dose dependent rect. 18 23
994 143.08 atmosphere 1000 1440 > th dose independent rect. 12 1
995 143.08 atmosphere 1000 1440 < th dose dependent no NA NA