Os11g0186400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA polymerase delta catalytic subunit (EC 2.7.7.7).
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Os11g0186400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA polymerase delta catalytic subunit (EC 2.7.7.7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.97 | 0.215 | 10.1 | 0.0786 | 0.538 | -0.804 | -0.327 | 0.411 | 0.0613 | 17.9 | 20.61 | 3 | -- | -- |
| 21.08 | 0.216 | 10.1 | 0.00666 | 0.536 | -0.788 | -0.281 | -- | 0.0386 | 17.9 | 20.64 | 3 | -- | -- |
| 21.19 | 0.216 | 10.1 | 0.0625 | 0.541 | -0.828 | -- | 0.293 | 0.0556 | 17.8 | 20.66 | 3 | -- | -- |
| 21.27 | 0.216 | 10.1 | 0.0128 | 0.539 | -0.807 | -- | -- | 0.0405 | 17.8 | 20.7 | 3 | -- | -- |
| 34.16 | 0.274 | 10.1 | -0.0128 | -- | -0.579 | -- | 0.181 | -0.00158 | -- | 18.33 | 3 | -- | -- |
| 30.54 | 0.259 | 10.1 | -0.162 | 0.425 | -- | -0.392 | -- | -0.0932 | 20 | -- | -- | -- | -- |
| 30.99 | 0.261 | 10.1 | -0.151 | 0.424 | -- | -- | -- | -0.0938 | 20.1 | -- | -- | -- | -- |
| 34.06 | 0.273 | 10.1 | -0.0311 | -- | -0.692 | -- | -- | -0.00768 | -- | 13.5 | 3 | -- | -- |
| 21.27 | 0.216 | 10.1 | -- | 0.538 | -0.802 | -- | -- | 0.0385 | 17.9 | 20.7 | 3 | -- | -- |
| 40.85 | 0.299 | 10.1 | -0.155 | -- | -- | -- | -- | -0.099 | -- | -- | -- | -- | -- |
| 31.59 | 0.263 | 10.1 | -- | 0.425 | -- | -- | -- | -0.077 | 20.1 | -- | -- | -- | -- |
| 34.08 | 0.273 | 10.1 | -- | -- | -0.702 | -- | -- | -0.00314 | -- | 12.08 | 2 | -- | -- |
| 41.48 | 0.301 | 10.1 | -- | -- | -- | -- | -- | -0.0818 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.05 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 2 | 21.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 4 | 21.18 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 9 | 21.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 13 | 21.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 16 | 21.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 19 | 21.33 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 25 | 21.37 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 30 | 21.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 36 | 21.45 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 55 | 21.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 62 | 21.67 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 107 | 21.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 118 | 21.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 136 | 22.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 159 | 22.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 162 | 22.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 23 |
| 168 | 22.16 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 170 | 22.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 179 | 22.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 185 | 22.20 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 190 | 22.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 204 | 22.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 209 | 22.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 274 | 22.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 276 | 22.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 283 | 22.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 310 | 22.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 324 | 22.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 340 | 22.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 375 | 22.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 452 | 22.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 460 | 22.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 792 | 23.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 18 |
| 879 | 23.31 | temperature | 10 | 10 | > th | dose dependent | sin | 19 | NA |
| 919 | 23.35 | temperature | 15 | 270 | > th | dose dependent | sin | 23 | NA |
| 930 | 23.36 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |