Os11g0184900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAC-domain protein 5-7.
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Os11g0184900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAC-domain protein 5-7.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.76 | 0.512 | 12.3 | 2.23 | 1.48 | -2.43 | 0.331 | 3.97 | -0.121 | 10.9 | 24.9 | 928 | -- | -- |
| 125.15 | 0.521 | 12.4 | 1.69 | 1.5 | -2.15 | -0.286 | -- | -0.31 | 10.7 | 24.91 | 929 | -- | -- |
| 119.17 | 0.508 | 12.3 | 2.17 | 1.47 | -2.41 | -- | 3.59 | -0.131 | 10.9 | 24.86 | 928 | -- | -- |
| 123.09 | 0.517 | 12.4 | 1.47 | 1.54 | -2.03 | -- | -- | -0.313 | 10.7 | 24.82 | 948 | -- | -- |
| 226.54 | 0.701 | 12.3 | 2.6 | -- | -3.4 | -- | 4.98 | 0.0241 | -- | 24.4 | 875 | -- | -- |
| 225.86 | 0.705 | 12.4 | 0.922 | 2.09 | -- | 0.383 | -- | -0.502 | 10.6 | -- | -- | -- | -- |
| 226.46 | 0.705 | 12.4 | 0.937 | 2.08 | -- | -- | -- | -0.501 | 10.6 | -- | -- | -- | -- |
| 239.12 | 0.72 | 12.4 | 1.65 | -- | -2.98 | -- | -- | -0.186 | -- | 24.3 | 876 | -- | -- |
| 175.14 | 0.616 | 12.4 | -- | 1.63 | -1.66 | -- | -- | -0.524 | 10.7 | 25.19 | 939 | -- | -- |
| 493.67 | 1.04 | 12.5 | 0.899 | -- | -- | -- | -- | -0.511 | -- | -- | -- | -- | -- |
| 249.61 | 0.739 | 12.5 | -- | 2.08 | -- | -- | -- | -0.606 | 10.5 | -- | -- | -- | -- |
| 306.5 | 0.815 | 12.5 | -- | -- | -2.63 | -- | -- | -0.413 | -- | 24.43 | 864 | -- | -- |
| 515 | 1.06 | 12.5 | -- | -- | -- | -- | -- | -0.611 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.29 | temperature | 25 | 720 | > th | dose dependent | sin | 17 | NA |
| 5 | 123.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 8 | 123.87 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 19 |
| 15 | 124.06 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 48 | 125.58 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 66 | 126.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 92 | 126.80 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 94 | 126.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 95 | 126.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 22 |
| 102 | 126.89 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 106 | 126.91 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 121 | 127.12 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 168 | 128.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 177 | 128.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 178 | 128.48 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 179 | 128.49 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 196 | 128.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 198 | 128.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 22 |
| 206 | 128.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 217 | 128.75 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 219 | 128.76 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 223 | 128.81 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 224 | 128.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 229 | 128.84 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 231 | 128.85 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 238 | 128.89 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 21 |
| 249 | 128.93 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 9 |
| 319 | 129.21 | humidity | 90 | 43200 | < th | dose independent | sin | 16 | NA |
| 328 | 129.24 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 22 |
| 352 | 129.33 | humidity | 90 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 355 | 129.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 367 | 129.36 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 378 | 129.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 388 | 129.43 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 392 | 129.45 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 406 | 129.49 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 20 |
| 425 | 129.53 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 432 | 129.56 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 459 | 129.62 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 460 | 129.62 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 10 |
| 479 | 129.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 505 | 129.73 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 19 |
| 508 | 129.73 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 520 | 129.77 | humidity | 90 | 43200 | < th | dose independent | sin | 5 | NA |
| 533 | 129.80 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 542 | 129.81 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 566 | 129.89 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 576 | 129.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 590 | 129.95 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 602 | 129.98 | humidity | 90 | 43200 | > th | dose independent | sin | 5 | NA |
| 608 | 129.99 | humidity | 90 | 43200 | > th | dose dependent | sin | 18 | NA |
| 611 | 129.99 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 622 | 130.02 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 20 |
| 626 | 130.04 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 647 | 130.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 13 |
| 649 | 130.08 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 13 |
| 653 | 130.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 663 | 130.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 670 | 130.13 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 682 | 130.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 689 | 130.19 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 710 | 130.23 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 786 | 130.44 | temperature | 10 | 720 | > th | dose dependent | sin | 20 | NA |
| 867 | 130.68 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 935 | 130.92 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 979 | 131.02 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |