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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0184800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Aspartic proteinase Asp1 precursor (EC 3.4.23.-) (OsAsp1) (Nucellin- like protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0349) R2 : 0.0157
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.199 (0.0735) R2dN8 : 0.0203 R2N8 : 0.0157
σ : 0.658
deviance : 198.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.74 0.645 2.81 -0.0904 0.14 0.362 0.201 1.39 0.209 6.16 1015 3478 -- --
193.55 0.648 2.8 0.105 0.135 0.456 0.0819 -- 0.251 5.85 1014 3560 -- --
188.84 0.64 2.81 -0.0876 0.141 0.36 -- 1.38 0.209 6.04 1015 3478 -- --
193.56 0.648 2.8 0.101 0.141 0.451 -- -- 0.252 5.91 1014 3560 -- --
189.86 0.642 2.81 -0.0738 -- 0.375 -- 1.4 0.217 -- 1015 3472 -- --
197.52 0.659 2.81 0.0713 0.125 -- 0.102 -- 0.205 6.23 -- -- -- --
197.55 0.658 2.81 0.0723 0.126 -- -- -- 0.204 6.13 -- -- -- --
194.19 0.649 2.8 0.167 -- 0.317 -- -- 0.274 -- 1014 6230 -- --
193.82 0.648 2.8 -- 0.142 0.442 -- -- 0.24 5.88 1014 3560 -- --
198.37 0.658 2.81 0.0759 -- -- -- -- 0.207 -- -- -- -- --
197.69 0.658 2.81 -- 0.127 -- -- -- 0.196 6.1 -- -- -- --
194.86 0.65 2.81 -- -- 0.43 -- -- 0.241 -- 1014 3560 -- --
198.52 0.658 2.82 -- -- -- -- -- 0.199 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 175.78 wind 3.0 270 > th dose independent rect. 2 1
2 176.79 wind 3.0 270 > th dose dependent rect. 2 1
5 178.02 wind 5.0 270 > th dose dependent rect. 2 3
11 178.97 wind 5.0 270 > th dose independent rect. 2 4
38 182.14 temperature 20.0 10 < th dose independent rect. 3 4
67 184.29 temperature 25.0 30 < th dose dependent rect. 3 4
73 184.51 precipitation 0.1 720 > th dose independent rect. 19 1
74 184.55 temperature 20.0 30 < th dose independent rect. 3 17
132 185.21 wind 5.0 720 < th dose independent rect. 20 6
134 185.48 humidity 50.0 4320 > th dose independent rect. 23 12
166 186.09 humidity 90.0 1440 < th dose independent rect. 4 1
174 186.29 wind 1.0 10 > th dose dependent rect. 3 3
179 186.38 precipitation 0.1 720 > th dose dependent rect. 19 1
181 186.41 humidity 90.0 1440 > th dose independent rect. 4 1
186 186.66 wind 9.0 720 < th dose dependent rect. 23 2
201 186.97 wind 5.0 720 < th dose independent rect. 23 2
202 187.02 temperature 20.0 30 < th dose independent sin 3 NA
221 187.21 wind 9.0 720 < th dose dependent rect. 21 5
233 187.34 temperature 20.0 30 < th dose independent rect. 24 20
245 187.50 precipitation 0.1 720 < th dose independent rect. 20 6
246 187.50 precipitation 0.1 720 < th dose dependent rect. 20 6
249 187.60 humidity 50.0 4320 < th dose independent rect. 9 1
266 187.60 humidity 50.0 4320 < th dose dependent rect. 9 1
294 187.71 humidity 50.0 4320 > th dose independent rect. 9 2
295 187.71 temperature 20.0 30 < th dose independent rect. 24 16
319 187.82 temperature 25.0 30 < th dose dependent rect. 3 11
322 187.85 temperature 20.0 30 > th dose independent sin 3 NA
378 188.21 wind 1.0 30 > th dose independent rect. 3 4
387 188.29 wind 7.0 720 > th dose dependent rect. 19 14
420 188.47 temperature 20.0 10 > th dose independent rect. 24 12
427 188.51 wind 7.0 720 > th dose dependent rect. 19 6
442 188.57 wind 1.0 90 < th dose dependent rect. 8 1
443 188.58 wind 7.0 720 > th dose dependent rect. 19 3
454 188.65 wind 7.0 720 > th dose independent rect. 19 13
460 188.70 wind 7.0 720 > th dose independent rect. 19 6
461 188.70 wind 5.0 720 < th dose independent rect. 22 10
494 188.82 temperature 30.0 720 < th dose independent rect. 18 10
510 188.90 atmosphere 1005.0 90 < th dose independent rect. 3 2
520 188.97 wind 5.0 720 < th dose independent rect. 20 13
521 188.97 temperature 25.0 30 < th dose dependent rect. 3 17
536 189.04 atmosphere 1005.0 10 < th dose independent rect. 3 3
542 189.06 radiation 1.0 720 < th dose dependent rect. 18 10
563 189.16 wind 7.0 720 > th dose independent rect. 19 3
653 189.36 humidity 70.0 4320 < th dose independent rect. 7 2
682 189.42 humidity 50.0 4320 > th dose independent rect. 5 6
684 189.43 humidity 70.0 4320 > th dose independent rect. 7 2
690 189.44 wind 9.0 270 < th dose dependent rect. 21 13
694 189.46 humidity 70.0 4320 > th dose independent rect. 24 9
709 189.49 humidity 70.0 4320 > th dose independent rect. 2 7
722 189.51 precipitation 0.1 720 < th dose independent rect. 20 15
724 189.51 precipitation 0.1 720 < th dose dependent rect. 20 15
762 189.63 wind 1.0 90 < th dose independent rect. 8 1
796 189.75 temperature 30.0 720 < th dose independent rect. 16 14
799 189.77 humidity 50.0 4320 > th dose independent rect. 18 17
807 189.80 radiation 1.0 720 < th dose dependent rect. 17 12
825 189.84 precipitation 0.1 720 > th dose dependent rect. 18 9
853 189.97 temperature 30.0 720 < th dose independent rect. 17 12
863 189.99 radiation 1.0 720 < th dose dependent rect. 17 4
880 190.03 temperature 30.0 720 < th dose independent rect. 17 4
897 190.09 precipitation 0.1 720 < th dose independent rect. 6 17
898 190.09 precipitation 0.1 720 < th dose dependent rect. 6 17
901 190.12 wind 3.0 1440 > th dose independent rect. 23 1
908 190.13 wind 1.0 270 > th dose independent rect. 24 14
916 190.16 radiation 1.0 720 < th dose independent rect. 16 13
918 190.16 precipitation 0.1 720 < th dose independent rect. 6 19
935 190.16 precipitation 0.1 720 < th dose dependent rect. 6 19
938 190.17 humidity 80.0 4320 < th dose dependent rect. 7 1
952 190.22 radiation 1.0 720 < th dose independent rect. 18 10
961 190.24 wind 1.0 30 > th dose independent rect. 3 11
966 190.25 wind 1.0 270 > th dose independent rect. 9 11
969 190.25 atmosphere 1015.0 4320 > th dose dependent rect. 6 2
975 190.27 atmosphere 1015.0 4320 > th dose independent rect. 6 1
978 190.27 atmosphere 1015.0 4320 < th dose independent rect. 7 1