Os11g0183800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0183800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.96 | 0.364 | 9.97 | 0.462 | 0.641 | 0.819 | 0.91 | -1.3 | 0.216 | 2.52 | 25.9 | 806 | -- | -- |
| 62.18 | 0.367 | 9.95 | 0.801 | 0.647 | 0.782 | 0.779 | -- | 0.281 | 2.46 | 25.98 | 841 | -- | -- |
| 62.6 | 0.368 | 9.97 | 0.455 | 0.613 | 0.813 | -- | -1.21 | 0.22 | 2.19 | 26.1 | 845 | -- | -- |
| 63.43 | 0.371 | 9.93 | 0.765 | 0.601 | 0.732 | -- | -- | 0.322 | 1.6 | 26.1 | 908 | -- | -- |
| 80.97 | 0.419 | 9.98 | 0.42 | -- | 1.11 | -- | -1.12 | 0.157 | -- | 26.07 | 973 | -- | -- |
| 77.08 | 0.412 | 9.89 | 1.02 | 0.804 | -- | 0.461 | -- | 0.542 | 0.729 | -- | -- | -- | -- |
| 77.93 | 0.413 | 9.89 | 1 | 0.803 | -- | -- | -- | 0.54 | 0.587 | -- | -- | -- | -- |
| 82.11 | 0.422 | 9.95 | 0.705 | -- | 1.05 | -- | -- | 0.248 | -- | 26 | 982 | -- | -- |
| 78.28 | 0.412 | 9.94 | -- | 0.637 | 0.864 | -- | -- | 0.29 | 1.57 | 26.3 | 977 | -- | -- |
| 118.35 | 0.508 | 9.88 | 1.03 | -- | -- | -- | -- | 0.554 | -- | -- | -- | -- | -- |
| 104.38 | 0.478 | 9.92 | -- | 0.818 | -- | -- | -- | 0.428 | 0.647 | -- | -- | -- | -- |
| 94.15 | 0.452 | 9.97 | -- | -- | 1.24 | -- | -- | 0.131 | -- | 26.29 | 1006 | -- | -- |
| 146.33 | 0.565 | 9.9 | -- | -- | -- | -- | -- | 0.44 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 59.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 4 | 59.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 8 | 59.94 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 15 |
| 12 | 60.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 14 | 60.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 16 | 60.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 64 | 60.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 66 | 60.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 73 | 60.73 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 75 | 60.74 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 93 | 61.02 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 122 | 61.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 150 | 61.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 173 | 61.65 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 13 |
| 176 | 61.67 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 208 | 61.79 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 219 | 61.83 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 232 | 61.84 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 255 | 61.97 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 259 | 61.99 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 275 | 62.00 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 21 |
| 301 | 62.14 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 306 | 62.16 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 16 |
| 320 | 62.23 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 335 | 62.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 345 | 62.34 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |
| 366 | 62.44 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 392 | 62.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 395 | 62.52 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 420 | 62.59 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 23 |
| 432 | 62.63 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 22 |
| 439 | 62.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 450 | 62.66 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 468 | 62.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 478 | 62.71 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 495 | 62.74 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 14 |
| 498 | 62.75 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 501 | 62.76 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 23 |
| 535 | 62.81 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 16 |
| 542 | 62.82 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 556 | 62.85 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 561 | 62.87 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 18 |
| 566 | 62.88 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 626 | 62.94 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 655 | 62.96 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 21 |
| 678 | 62.98 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 23 |
| 706 | 63.01 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 707 | 63.01 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 23 |
| 711 | 63.02 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 719 | 63.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 733 | 63.07 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 769 | 63.14 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 7 |
| 779 | 63.16 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 23 |
| 787 | 63.18 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 15 |
| 851 | 63.25 | temperature | 25 | 720 | < th | dose independent | rect. | 21 | 23 |
| 860 | 63.28 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 902 | 63.37 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 946 | 63.43 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 953 | 63.44 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 18 |