Os11g0181100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transmembrane protein TM9SF3 (Fragment).
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Os11g0181100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transmembrane protein TM9SF3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.25 | 0.336 | 8.61 | 0.559 | 0.416 | -1.19 | -0.0969 | -0.727 | 0.0519 | 9.17 | 21.4 | 1467 | -- | -- |
| 51.64 | 0.335 | 8.61 | 0.518 | 0.421 | -1 | -0.104 | -- | 0.0482 | 9.07 | 21.48 | 1472 | -- | -- |
| 51.28 | 0.334 | 8.6 | 0.556 | 0.418 | -1.19 | -- | -0.718 | 0.0538 | 9.24 | 21.4 | 1463 | -- | -- |
| 51.64 | 0.335 | 8.62 | 0.501 | 0.415 | -1.02 | -- | -- | 0.0434 | 9.24 | 21.4 | 1472 | -- | -- |
| 61.27 | 0.365 | 8.62 | 0.536 | -- | -1.25 | -- | -0.65 | 0.054 | -- | 21.02 | 1522 | -- | -- |
| 59.56 | 0.362 | 8.59 | 0.772 | 0.421 | -- | -0.236 | -- | 0.165 | 8.85 | -- | -- | -- | -- |
| 59.71 | 0.362 | 8.59 | 0.765 | 0.42 | -- | -- | -- | 0.166 | 9.09 | -- | -- | -- | -- |
| 61.53 | 0.365 | 8.63 | 0.492 | -- | -1.07 | -- | -- | 0.0462 | -- | 21.11 | 1530 | -- | -- |
| 56.24 | 0.349 | 8.63 | -- | 0.438 | -1.02 | -- | -- | -0.0303 | 8.95 | 21.27 | 2665 | -- | -- |
| 69.9 | 0.391 | 8.6 | 0.764 | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
| 75.13 | 0.405 | 8.61 | -- | 0.421 | -- | -- | -- | 0.0809 | 8.96 | -- | -- | -- | -- |
| 66.19 | 0.379 | 8.65 | -- | -- | -1.11 | -- | -- | -0.0523 | -- | 20.89 | 2860 | -- | -- |
| 85.29 | 0.431 | 8.62 | -- | -- | -- | -- | -- | 0.0837 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.77 | humidity | 60 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 13 | 50.71 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 24 | 50.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 23 |
| 47 | 51.07 | humidity | 50 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 71 | 51.20 | temperature | 20 | 1440 | < th | dose dependent | sin | 10 | NA |
| 139 | 51.44 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 3 |
| 147 | 51.45 | humidity | 50 | 4320 | < th | dose dependent | rect. | 17 | 22 |
| 163 | 51.49 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 183 | 51.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 217 | 51.60 | humidity | 50 | 4320 | < th | dose dependent | rect. | 11 | 5 |
| 249 | 51.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 255 | 51.63 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 16 |
| 274 | 51.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 286 | 51.66 | humidity | 60 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 293 | 51.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 294 | 51.67 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 302 | 51.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 17 |
| 306 | 51.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 21 |
| 344 | 51.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 377 | 51.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 382 | 51.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 391 | 51.73 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 407 | 51.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 408 | 51.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 447 | 51.75 | humidity | 50 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 459 | 51.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 460 | 51.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 464 | 51.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 18 | 11 |
| 468 | 51.77 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 469 | 51.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 476 | 51.77 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 478 | 51.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 484 | 51.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 488 | 51.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 568 | 51.84 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 584 | 51.84 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 586 | 51.85 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 644 | 51.90 | humidity | 50 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 647 | 51.91 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 649 | 51.91 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 679 | 51.93 | humidity | 50 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 704 | 51.94 | humidity | 60 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 726 | 51.96 | humidity | 50 | 720 | < th | dose independent | rect. | 17 | 1 |
| 731 | 51.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 738 | 51.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 752 | 51.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 777 | 51.98 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 804 | 52.00 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 824 | 52.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 864 | 52.03 | humidity | 60 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 889 | 52.04 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 18 |