Os11g0180300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0180300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.99 | 0.266 | 8.92 | -0.315 | 0.331 | -0.551 | -0.348 | -0.246 | 0.118 | 10.6 | 29.4 | 11 | -- | -- |
| 32.06 | 0.264 | 8.92 | -0.359 | 0.332 | -0.549 | -0.28 | -- | 0.108 | 10.6 | 29.5 | 11 | -- | -- |
| 32.38 | 0.265 | 8.92 | -0.37 | 0.336 | -0.542 | -- | 0.0237 | 0.108 | 10.7 | 29.5 | 11 | -- | -- |
| 32.38 | 0.265 | 8.92 | -0.368 | 0.335 | -0.541 | -- | -- | 0.108 | 10.7 | 29.5 | 11 | -- | -- |
| 38.2 | 0.288 | 8.94 | -0.424 | -- | -0.766 | -- | 0.00719 | 0.0664 | -- | 29.7 | 3 | -- | -- |
| 36.22 | 0.282 | 8.89 | -0.229 | 0.468 | -- | -0.209 | -- | 0.218 | 11.8 | -- | -- | -- | -- |
| 36.41 | 0.283 | 8.9 | -0.238 | 0.469 | -- | -- | -- | 0.218 | 11.9 | -- | -- | -- | -- |
| 38.18 | 0.288 | 8.94 | -0.423 | -- | -0.766 | -- | -- | 0.0668 | -- | 29.8 | 2 | -- | -- |
| 35.58 | 0.279 | 8.91 | -- | 0.37 | -0.388 | -- | -- | 0.177 | 11.2 | 29.5 | 11 | -- | -- |
| 50.27 | 0.331 | 8.91 | -0.252 | -- | -- | -- | -- | 0.211 | -- | -- | -- | -- | -- |
| 37.9 | 0.288 | 8.89 | -- | 0.472 | -- | -- | -- | 0.244 | 11.9 | -- | -- | -- | -- |
| 42.62 | 0.304 | 8.92 | -- | -- | -0.653 | -- | -- | 0.132 | -- | 29.8 | 2 | -- | -- |
| 51.95 | 0.336 | 8.9 | -- | -- | -- | -- | -- | 0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 2 | 29.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 9 | 29.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 10 | 29.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 26 | 30.15 | temperature | 30 | 10 | < th | dose dependent | sin | 5 | NA |
| 34 | 30.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 35 | 30.30 | temperature | 10 | 10 | > th | dose dependent | sin | 5 | NA |
| 44 | 30.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 12 |
| 57 | 30.46 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 98 | 30.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 108 | 30.72 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 164 | 30.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 165 | 30.93 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 169 | 30.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 22 |
| 205 | 31.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 219 | 31.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 19 |
| 306 | 31.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 16 |
| 483 | 31.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 494 | 31.73 | wind | 9 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 498 | 31.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 501 | 31.74 | wind | 9 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 511 | 31.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 7 |
| 561 | 31.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 649 | 31.96 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 653 | 31.96 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 685 | 32.01 | wind | 9 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 696 | 32.03 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 700 | 32.03 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 715 | 32.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 717 | 32.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 727 | 32.06 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 18 |
| 728 | 32.06 | wind | 7 | 270 | < th | dose independent | rect. | 3 | 22 |
| 730 | 32.06 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 9 |
| 733 | 32.07 | wind | 9 | 14400 | < th | dose independent | sin | 4 | NA |
| 735 | 32.07 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 746 | 32.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 747 | 32.08 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 14 |
| 790 | 32.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 799 | 32.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 800 | 32.13 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 803 | 32.13 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 812 | 32.14 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 814 | 32.14 | temperature | 25 | 10 | < th | dose independent | rect. | 2 | 17 |
| 836 | 32.15 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 6 | 19 |
| 861 | 32.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 864 | 32.17 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 9 | 17 |
| 868 | 32.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 9 |
| 873 | 32.18 | wind | 1 | 270 | > th | dose independent | rect. | 23 | 7 |
| 888 | 32.19 | wind | 9 | 14400 | > th | dose independent | sin | 4 | NA |
| 889 | 32.19 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 14 |
| 952 | 32.22 | wind | 7 | 30 | < th | dose independent | rect. | 9 | 17 |
| 969 | 32.23 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 996 | 32.25 | temperature | 20 | 10 | < th | dose independent | rect. | 2 | 11 |