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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0176000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0447) R2 : 0.00292
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.109 (0.094) R2dN8 : 0.00377 R2N8 : 0.00292
σ : 0.841
deviance : 324.65
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
301.24 0.815 2.83 0.452 0.143 -1.69 -0.308 6.66 0.119 17.7 51.64 4226 -- --
315.57 0.827 2.97 0.397 0.195 -0.436 -0.554 -- 0.108 17.4 76.08 1826 -- --
301.43 0.809 2.83 0.468 0.151 -1.71 -- 6.7 0.123 18.3 51.58 4225 -- --
315.58 0.827 2.98 0.404 0.257 -0.447 -- -- 0.109 18.5 75.14 2021 -- --
302.5 0.81 2.83 0.454 -- -1.74 -- 6.81 0.113 -- 51.61 4225 -- --
320.32 0.839 2.96 0.325 0.144 -- -0.488 -- 0.15 16.6 -- -- -- --
320.79 0.839 2.97 0.321 0.154 -- -- -- 0.147 17.9 -- -- -- --
317.19 0.829 2.98 0.422 -- -0.458 -- -- 0.0747 -- 66.15 1398 -- --
319 0.832 2.99 -- 0.208 -0.411 -- -- 0.0714 18.9 75.03 2356 -- --
322.01 0.839 2.96 0.316 -- -- -- -- 0.144 -- -- -- -- --
323.49 0.841 2.97 -- 0.149 -- -- -- 0.111 18 -- -- -- --
320.86 0.834 2.98 -- -- -0.382 -- -- 0.0673 -- 75 2461 -- --
324.65 0.841 2.97 -- -- -- -- -- 0.109 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 288.89 humidity 90.0 1440 < th dose independent rect. 4 1
2 291.42 atmosphere 1005.0 30 > th dose dependent rect. 12 8
3 292.40 temperature 25.0 30 < th dose dependent rect. 13 1
5 292.41 humidity 90.0 1440 > th dose independent rect. 4 1
17 293.18 temperature 25.0 10 < th dose independent rect. 13 1
33 294.71 atmosphere 1005.0 90 > th dose independent rect. 12 8
34 294.77 temperature 20.0 4320 > th dose independent rect. 23 1
37 295.01 humidity 70.0 1440 > th dose dependent rect. 4 1
39 295.04 atmosphere 1005.0 30 > th dose dependent rect. 12 2
45 295.46 temperature 25.0 30 < th dose independent rect. 13 7
53 296.13 humidity 70.0 10 > th dose dependent rect. 12 8
54 296.14 temperature 20.0 4320 < th dose independent rect. 23 2
88 297.39 humidity 90.0 10 > th dose independent rect. 18 2
92 297.45 atmosphere 1005.0 270 > th dose independent rect. 16 2
106 297.78 temperature 30.0 30 < th dose dependent rect. 12 8
113 298.04 precipitation 0.1 90 > th dose independent rect. 13 1
116 298.04 precipitation 0.1 90 > th dose dependent rect. 13 1
124 298.21 radiation 10.0 10 < th dose dependent rect. 14 1
138 298.42 radiation 10.0 30 < th dose independent rect. 13 2
143 298.47 atmosphere 1005.0 90 > th dose independent rect. 5 15
152 298.57 radiation 10.0 720 < th dose independent rect. 10 4
181 299.03 radiation 10.0 720 < th dose dependent rect. 10 3
194 299.32 temperature 30.0 30 < th dose dependent rect. 12 23
195 299.33 humidity 50.0 4320 < th dose dependent rect. 16 22
219 299.56 atmosphere 1000.0 90 < th dose dependent rect. 20 3
220 299.57 humidity 90.0 10 < th dose independent rect. 10 11
230 299.73 humidity 80.0 30 > th dose independent rect. 12 8
231 299.73 temperature 25.0 30 < th dose dependent sin 0 NA
238 299.87 radiation 10.0 270 < th dose independent rect. 10 8
277 300.30 atmosphere 1000.0 90 < th dose independent rect. 20 3
278 300.30 atmosphere 1005.0 90 > th dose independent rect. 7 13
288 300.44 humidity 50.0 4320 < th dose independent rect. 16 22
289 300.45 radiation 10.0 270 < th dose independent rect. 10 21
307 300.63 atmosphere 995.0 43200 < th dose independent rect. 2 15
311 300.68 temperature 10.0 90 > th dose dependent rect. 13 23
312 300.69 atmosphere 995.0 43200 > th dose independent rect. 2 14
318 300.71 temperature 30.0 90 < th dose dependent rect. 5 15
320 300.74 atmosphere 995.0 43200 < th dose independent rect. 1 17
328 300.77 atmosphere 995.0 43200 < th dose independent rect. 3 13
355 300.91 atmosphere 995.0 43200 > th dose independent sin 2 NA
356 300.91 atmosphere 995.0 43200 < th dose independent sin 2 NA
367 300.96 atmosphere 995.0 43200 > th dose independent rect. 4 11
376 300.97 humidity 50.0 4320 < th dose dependent sin 9 NA
392 301.06 atmosphere 995.0 43200 < th dose independent rect. 15 15
399 301.09 atmosphere 995.0 43200 > th dose independent rect. 15 16
411 301.12 temperature 20.0 10 > th dose dependent rect. 2 19
416 301.15 temperature 20.0 30 > th dose dependent rect. 24 21
429 301.25 temperature 20.0 30 > th dose dependent rect. 2 17
430 301.26 humidity 50.0 4320 > th dose independent rect. 16 22
439 301.31 humidity 50.0 90 > th dose dependent rect. 12 11
442 301.35 atmosphere 1015.0 4320 < th dose independent rect. 21 1
444 301.36 atmosphere 1015.0 4320 > th dose independent rect. 21 1
447 301.36 humidity 70.0 90 > th dose dependent rect. 18 1
454 301.40 temperature 30.0 30 < th dose dependent rect. 7 13
456 301.41 atmosphere 995.0 43200 > th dose independent rect. 16 12
459 301.42 radiation 10.0 1440 > th dose independent rect. 11 2
468 301.46 atmosphere 1005.0 90 < th dose independent rect. 8 12
474 301.48 radiation 10.0 1440 < th dose dependent rect. 13 1
480 301.52 atmosphere 995.0 43200 < th dose independent rect. 16 11
483 301.53 radiation 20.0 270 < th dose dependent rect. 10 8
521 301.66 humidity 50.0 4320 < th dose independent sin 9 NA
561 301.79 humidity 80.0 4320 < th dose dependent rect. 6 2
590 301.88 atmosphere 1005.0 43200 < th dose dependent rect. 21 1
592 301.89 temperature 25.0 30 > th dose independent rect. 11 10
614 301.97 humidity 50.0 4320 < th dose independent rect. 14 1
624 302.00 temperature 25.0 10 < th dose dependent rect. 6 9
639 302.05 precipitation 0.1 90 > th dose independent rect. 13 8
665 302.15 atmosphere 995.0 43200 > th dose independent sin 14 NA
676 302.19 temperature 25.0 4320 < th dose dependent rect. 24 1
682 302.20 temperature 20.0 4320 > th dose dependent rect. 24 1
698 302.26 atmosphere 995.0 43200 < th dose independent sin 14 NA
699 302.26 humidity 50.0 4320 < th dose dependent rect. 10 7
722 302.27 temperature 20.0 4320 > th dose dependent rect. 4 1
761 302.33 temperature 20.0 4320 > th dose dependent rect. 23 6
762 302.33 temperature 20.0 4320 > th dose dependent rect. 23 8
770 302.34 temperature 10.0 4320 > th dose dependent rect. 4 1
771 302.34 temperature 30.0 4320 < th dose dependent rect. 4 1
774 302.35 humidity 70.0 270 > th dose independent rect. 16 1
780 302.36 atmosphere 995.0 43200 < th dose independent rect. 7 19
808 302.39 atmosphere 995.0 43200 > th dose independent rect. 7 20
844 302.44 radiation 10.0 270 < th dose independent sin 22 NA
864 302.46 humidity 80.0 10 > th dose dependent rect. 18 2
887 302.50 atmosphere 1015.0 4320 < th dose independent rect. 6 18
929 302.57 temperature 20.0 4320 > th dose dependent rect. 3 4
930 302.57 humidity 90.0 30 < th dose dependent rect. 11 10
960 302.63 temperature 20.0 270 < th dose independent rect. 5 3
977 302.65 atmosphere 1015.0 4320 > th dose independent rect. 6 18
990 302.66 radiation 10.0 90 < th dose dependent sin 21 NA