Os11g0175800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os11g0175800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.83 | 0.378 | 8.4 | -1.15 | 0.187 | 0.617 | 0.884 | 0.649 | 0.0593 | 20.3 | 70 | 444 | -- | -- |
| 65.39 | 0.377 | 8.39 | -1.11 | 0.181 | 0.631 | 0.724 | -- | 0.0693 | 20.9 | 70.29 | 446 | -- | -- |
| 67.02 | 0.381 | 8.39 | -1.15 | 0.174 | 0.607 | -- | 0.277 | 0.0645 | 20.6 | 70.52 | 443 | -- | -- |
| 67.15 | 0.382 | 8.39 | -1.13 | 0.184 | 0.629 | -- | -- | 0.0711 | 20.5 | 70.23 | 446 | -- | -- |
| 68.02 | 0.384 | 8.39 | -1.16 | -- | 0.508 | -- | 0.378 | 0.06 | -- | 70.05 | 400 | -- | -- |
| 75.05 | 0.406 | 8.39 | -1.2 | 0.316 | -- | 0.4 | -- | 0.0327 | 3.42 | -- | -- | -- | -- |
| 75.44 | 0.407 | 8.39 | -1.21 | 0.326 | -- | -- | -- | 0.0301 | 3.94 | -- | -- | -- | -- |
| 68.25 | 0.385 | 8.39 | -1.14 | -- | 0.512 | -- | -- | 0.0625 | -- | 70.23 | 367 | -- | -- |
| 100.55 | 0.467 | 8.36 | -- | 0.278 | 0.784 | -- | -- | 0.206 | 19 | 70.1 | 437 | -- | -- |
| 81.24 | 0.421 | 8.39 | -1.19 | -- | -- | -- | -- | 0.0388 | -- | -- | -- | -- | -- |
| 113.84 | 0.499 | 8.36 | -- | 0.302 | -- | -- | -- | 0.165 | 3.99 | -- | -- | -- | -- |
| 102.63 | 0.472 | 8.36 | -- | -- | 0.57 | -- | -- | 0.192 | -- | 70.46 | 367 | -- | -- |
| 118.84 | 0.509 | 8.36 | -- | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.68 | humidity | 70.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 12 | 64.69 | humidity | 70.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 14 | 64.84 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 15 | 64.84 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 17 | 64.88 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 18 | 64.90 | humidity | 70.0 | 270 | > th | dose independent | sin | 18 | NA |
| 30 | 65.14 | temperature | 25.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 32 | 65.18 | humidity | 70.0 | 270 | < th | dose independent | rect. | 10 | 10 |
| 46 | 65.24 | humidity | 70.0 | 270 | > th | dose independent | rect. | 13 | 12 |
| 47 | 65.25 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 49 | 65.26 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 4 |
| 50 | 65.26 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 4 |
| 52 | 65.29 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 55 | 65.34 | humidity | 70.0 | 270 | < th | dose independent | sin | 19 | NA |
| 72 | 65.40 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 76 | 65.42 | humidity | 80.0 | 30 | < th | dose independent | rect. | 12 | 18 |
| 83 | 65.47 | humidity | 80.0 | 30 | < th | dose independent | rect. | 12 | 14 |
| 86 | 65.48 | humidity | 80.0 | 30 | < th | dose independent | rect. | 12 | 8 |
| 92 | 65.51 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 4 |
| 109 | 65.60 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 135 | 65.71 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 138 | 65.74 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 139 | 65.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 146 | 65.78 | humidity | 70.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 147 | 65.78 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 150 | 65.78 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 152 | 65.79 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 170 | 65.83 | humidity | 80.0 | 30 | < th | dose independent | rect. | 12 | 12 |
| 174 | 65.84 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 181 | 65.88 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 204 | 65.92 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 14 | 5 |
| 207 | 65.93 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 240 | 65.96 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 14 | NA |
| 259 | 65.98 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 268 | 66.00 | humidity | 60.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 295 | 66.01 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 302 | 66.02 | wind | 3.0 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 304 | 66.03 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 10 | 6 |
| 322 | 66.04 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 338 | 66.06 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 346 | 66.08 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 357 | 66.09 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 390 | 66.12 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 22 |
| 427 | 66.14 | humidity | 70.0 | 270 | < th | dose independent | rect. | 12 | 23 |
| 431 | 66.15 | humidity | 60.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 434 | 66.15 | wind | 5.0 | 90 | > th | dose independent | rect. | 12 | 8 |
| 495 | 66.23 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 496 | 66.23 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 497 | 66.23 | humidity | 70.0 | 720 | < th | dose independent | rect. | 10 | 3 |
| 502 | 66.24 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 503 | 66.24 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 506 | 66.24 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 10 |
| 508 | 66.24 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 12 |
| 509 | 66.24 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 13 |
| 511 | 66.24 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 13 |
| 512 | 66.25 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 514 | 66.25 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 521 | 66.26 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 535 | 66.27 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 10 |
| 537 | 66.27 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 10 |
| 541 | 66.28 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 544 | 66.29 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 9 |
| 575 | 66.32 | humidity | 80.0 | 720 | < th | dose independent | rect. | 8 | 7 |
| 579 | 66.32 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 596 | 66.33 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 12 |
| 632 | 66.38 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 642 | 66.40 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 9 |
| 669 | 66.42 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 10 | 4 |
| 696 | 66.47 | humidity | 70.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 739 | 66.52 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 9 | 8 |
| 780 | 66.53 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 805 | 66.55 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 814 | 66.56 | wind | 1.0 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 829 | 66.56 | humidity | 80.0 | 10 | < th | dose independent | rect. | 12 | 21 |
| 843 | 66.57 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 20 | 14 |
| 865 | 66.58 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 16 | 18 |
| 875 | 66.59 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 877 | 66.59 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 1 | 9 |
| 879 | 66.59 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 23 | 11 |
| 898 | 66.60 | humidity | 70.0 | 720 | > th | dose independent | rect. | 9 | 7 |
| 928 | 66.61 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 6 |
| 941 | 66.63 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 3 |
| 945 | 66.63 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 964 | 66.65 | humidity | 70.0 | 720 | > th | dose independent | rect. | 9 | 9 |
| 985 | 66.66 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 1 |