Os11g0173600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os11g0173600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.52 | 0.557 | 4.24 | 1.89 | 0.689 | -1.27 | 1.85 | -2.75 | 0.319 | 15 | 21.9 | 1107 | -- | -- |
| 159 | 0.587 | 4.33 | 1.08 | 0.694 | -1.15 | 1.39 | -- | 0.125 | 15.2 | 22.08 | 1074 | -- | -- |
| 150.04 | 0.57 | 4.24 | 1.82 | 0.666 | -1.3 | -- | -2.6 | 0.357 | 15.6 | 21.7 | 1237 | -- | -- |
| 165.36 | 0.599 | 4.32 | 1.11 | 0.702 | -1.16 | -- | -- | 0.146 | 15.4 | 22.1 | 1085 | -- | -- |
| 169.89 | 0.607 | 4.24 | 1.78 | -- | -1.4 | -- | -2.86 | 0.3 | -- | 21.7 | 1777 | -- | -- |
| 211.29 | 0.681 | 4.24 | 1.51 | 0.598 | -- | 1.5 | -- | 0.506 | 15.8 | -- | -- | -- | -- |
| 217.64 | 0.691 | 4.24 | 1.53 | 0.617 | -- | -- | -- | 0.515 | 16.2 | -- | -- | -- | -- |
| 188.96 | 0.64 | 4.33 | 0.943 | -- | -1.24 | -- | -- | 0.11 | -- | 21.78 | 1872 | -- | -- |
| 188.16 | 0.639 | 4.33 | -- | 0.552 | -1.44 | -- | -- | 0.119 | 15.7 | 21.59 | 3730 | -- | -- |
| 238.18 | 0.721 | 4.24 | 1.5 | -- | -- | -- | -- | 0.499 | -- | -- | -- | -- | -- |
| 279.09 | 0.781 | 4.28 | -- | 0.588 | -- | -- | -- | 0.345 | 16.3 | -- | -- | -- | -- |
| 205.71 | 0.668 | 4.37 | -- | -- | -1.66 | -- | -- | -0.11 | -- | 21 | 6362 | -- | -- |
| 297.71 | 0.805 | 4.28 | -- | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 5 | 142.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 6 | 143.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 11 | 144.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 14 | 144.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 15 | 144.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 22 | 145.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 23 | 146.01 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 25 | 146.22 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 28 | 146.38 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 32 | 146.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 44 | 147.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 57 | 147.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 87 | 148.77 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 98 | 149.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 103 | 149.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 108 | 149.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 109 | 149.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 128 | 149.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 136 | 149.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 6 |
| 161 | 150.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 162 | 150.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 184 | 150.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 186 | 150.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 192 | 150.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 193 | 150.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 3 |
| 223 | 150.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 238 | 151.06 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 290 | 151.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 296 | 151.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 363 | 151.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 445 | 152.43 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 458 | 152.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 467 | 152.54 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 475 | 152.57 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 553 | 152.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 5 |
| 584 | 153.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 593 | 153.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 638 | 153.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 639 | 153.46 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 642 | 153.47 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 744 | 153.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 838 | 154.23 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 867 | 154.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 903 | 154.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |