Os11g0173500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os11g0173500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.41 | 0.57 | 7.15 | 1.37 | 0.565 | 1.41 | -0.187 | 0.754 | 0.674 | 21.9 | 20.63 | 1127 | -- | -- |
| 148.64 | 0.568 | 7.18 | 1.22 | 0.549 | 1.31 | -0.0327 | -- | 0.645 | 21.8 | 20.67 | 1075 | -- | -- |
| 147.53 | 0.566 | 7.16 | 1.36 | 0.567 | 1.4 | -- | 0.704 | 0.672 | 21.8 | 20.64 | 1126 | -- | -- |
| 148.64 | 0.568 | 7.17 | 1.23 | 0.554 | 1.31 | -- | -- | 0.645 | 21.8 | 20.63 | 1077 | -- | -- |
| 163.66 | 0.596 | 7.15 | 1.33 | -- | 1.46 | -- | 0.601 | 0.642 | -- | 20.7 | 948 | -- | -- |
| 193.92 | 0.653 | 7.11 | 1.75 | 0.682 | -- | -0.164 | -- | 0.952 | 22.3 | -- | -- | -- | -- |
| 194.03 | 0.652 | 7.11 | 1.76 | 0.683 | -- | -- | -- | 0.953 | 22.3 | -- | -- | -- | -- |
| 164.58 | 0.598 | 7.17 | 1.21 | -- | 1.39 | -- | -- | 0.62 | -- | 20.73 | 925 | -- | -- |
| 181.82 | 0.628 | 7.24 | -- | 0.58 | 1.8 | -- | -- | 0.405 | 21.6 | 20.78 | 1272 | -- | -- |
| 222.47 | 0.697 | 7.09 | 1.77 | -- | -- | -- | -- | 0.955 | -- | -- | -- | -- | -- |
| 275.47 | 0.776 | 7.15 | -- | 0.694 | -- | -- | -- | 0.757 | 22.5 | -- | -- | -- | -- |
| 197.86 | 0.655 | 7.21 | -- | -- | 1.86 | -- | -- | 0.425 | -- | 20.49 | 1019 | -- | -- |
| 304.95 | 0.815 | 7.13 | -- | -- | -- | -- | -- | 0.758 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 134.68 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 134.74 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 4 | 136.02 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 7 |
| 10 | 136.51 | wind | 9 | 14400 | < th | dose dependent | rect. | 23 | 14 |
| 12 | 136.55 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 59 | 137.77 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 83 | 138.02 | wind | 1 | 14400 | > th | dose dependent | sin | 7 | NA |
| 96 | 138.11 | wind | 9 | 14400 | < th | dose dependent | sin | 7 | NA |
| 103 | 138.21 | wind | 5 | 14400 | < th | dose dependent | sin | 7 | NA |
| 109 | 138.31 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 116 | 138.36 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 7 |
| 154 | 138.61 | wind | 3 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 193 | 138.89 | wind | 3 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 198 | 138.91 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 276 | 139.33 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 285 | 139.38 | wind | 3 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 287 | 139.39 | wind | 3 | 14400 | < th | dose independent | sin | 8 | NA |
| 374 | 139.85 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 382 | 139.89 | wind | 1 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 409 | 140.05 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 427 | 140.15 | wind | 3 | 14400 | > th | dose independent | sin | 8 | NA |
| 538 | 140.75 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 596 | 141.12 | wind | 9 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 648 | 141.50 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 664 | 141.59 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 764 | 142.22 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 775 | 142.35 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 776 | 142.35 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 813 | 142.63 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 949 | 143.42 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |