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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0173100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0255) R2 : 0.00889
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.108 (0.0536) R2dN8 : 0.0115 R2N8 : 0.00889
σ : 0.48
deviance : 105.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.12 0.465 3.09 0.0175 0.188 -0.496 -0.33 0.765 0.174 6.08 0.67 1475 -- --
98.28 0.462 3.09 -0.0524 0.187 -0.627 -0.368 -- 0.166 5.7 0.53 1462 -- --
98.17 0.461 3.08 0.0424 0.194 -0.468 -- 1.05 0.163 7.19 0.7299 1499 -- --
98.41 0.462 3.09 -0.0532 0.196 -0.665 -- -- 0.166 7.17 0.4667 1480 -- --
99.27 0.464 3.09 0.0121 -- -0.367 -- 1.32 0.146 -- 0.72 1989 -- --
102.25 0.474 3.12 -0.204 0.174 -- -0.543 -- 0.0796 4.66 -- -- -- --
102.83 0.475 3.11 -0.2 0.183 -- -- -- 0.0826 5.84 -- -- -- --
100.4 0.467 3.09 -0.0506 -- -0.633 -- -- 0.172 -- 0.4683 1467 -- --
98.47 0.462 3.09 -- 0.199 -0.693 -- -- 0.172 7.24 0.46 1481 -- --
104.58 0.478 3.12 -0.194 -- -- -- -- 0.0869 -- -- -- -- --
103.88 0.477 3.11 -- 0.18 -- -- -- 0.105 5.89 -- -- -- --
100.46 0.467 3.1 -- -- -0.652 -- -- 0.176 -- 0.47 1467 -- --
105.57 0.48 3.11 -- -- -- -- -- 0.108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.48 radiation 1.0 1440 < th dose independent rect. 11 1
2 93.48 radiation 1.0 1440 < th dose dependent rect. 11 1
3 93.92 precipitation 0.1 270 > th dose independent rect. 2 2
4 93.92 precipitation 0.1 270 > th dose dependent rect. 2 2
9 95.54 precipitation 0.1 270 > th dose dependent rect. 24 4
10 95.55 precipitation 0.1 270 > th dose independent rect. 24 4
15 95.86 humidity 60.0 14400 > th dose independent rect. 5 3
16 96.09 radiation 1.0 1440 > th dose independent rect. 13 1
17 96.12 radiation 1.0 1440 < th dose independent rect. 12 3
18 96.12 radiation 1.0 1440 < th dose dependent rect. 12 3
25 96.19 wind 1.0 270 < th dose dependent rect. 24 1
35 96.28 radiation 1.0 1440 > th dose independent rect. 11 1
55 96.69 humidity 60.0 14400 > th dose independent rect. 20 12
57 96.72 humidity 60.0 14400 > th dose independent rect. 1 7
67 96.87 wind 1.0 10 < th dose independent rect. 3 1
70 96.90 precipitation 0.1 30 > th dose independent rect. 3 11
78 96.90 precipitation 0.1 30 > th dose dependent rect. 3 11
86 96.92 precipitation 0.1 30 > th dose independent rect. 3 5
98 96.92 precipitation 0.1 30 > th dose dependent rect. 3 3
114 96.93 precipitation 0.1 30 > th dose independent rect. 3 3
129 97.10 humidity 60.0 14400 < th dose independent rect. 6 1
131 97.10 humidity 60.0 14400 < th dose independent rect. 20 1
133 97.10 radiation 20.0 14400 > th dose independent rect. 17 1
184 97.10 humidity 60.0 14400 < th dose dependent rect. 6 1
186 97.10 humidity 60.0 14400 < th dose dependent rect. 20 1
188 97.10 radiation 20.0 14400 > th dose dependent rect. 17 1
239 97.12 precipitation 0.1 270 > th dose independent rect. 2 6
241 97.12 precipitation 0.1 270 > th dose dependent rect. 2 6
242 97.13 temperature 20.0 10 > th dose independent rect. 3 1
255 97.27 wind 1.0 90 < th dose independent rect. 23 5
258 97.30 atmosphere 1000.0 90 < th dose independent rect. 2 1
259 97.30 atmosphere 1000.0 10 < th dose independent rect. 3 1
269 97.30 atmosphere 1000.0 90 < th dose dependent rect. 2 1
270 97.30 atmosphere 1000.0 10 < th dose dependent rect. 3 1
285 97.34 wind 9.0 4320 > th dose dependent rect. 18 2
288 97.39 wind 1.0 270 < th dose independent rect. 23 2
358 97.52 wind 3.0 720 > th dose dependent rect. 21 2
379 97.64 atmosphere 1005.0 720 > th dose independent rect. 19 5
380 97.65 precipitation 0.1 90 < th dose independent sin 5 NA
381 97.65 precipitation 0.1 90 < th dose dependent sin 5 NA
382 97.66 wind 1.0 90 < th dose independent rect. 17 11
383 97.66 wind 1.0 10 < th dose dependent rect. 3 1
390 97.69 wind 9.0 4320 > th dose independent rect. 18 1
393 97.72 precipitation 0.1 30 < th dose independent sin 3 NA
395 97.72 precipitation 0.1 270 > th dose independent rect. 23 9
396 97.72 precipitation 0.1 30 < th dose dependent sin 3 NA
398 97.72 precipitation 0.1 270 > th dose dependent rect. 23 9
425 97.79 wind 1.0 90 < th dose independent rect. 2 2
453 97.82 radiation 1.0 1440 < th dose dependent rect. 11 9
455 97.83 radiation 1.0 1440 > th dose independent rect. 11 20
456 97.83 radiation 1.0 1440 < th dose independent rect. 11 20
460 97.83 radiation 1.0 1440 < th dose dependent rect. 11 13
463 97.84 atmosphere 1005.0 270 < th dose dependent rect. 24 3
478 97.86 wind 5.0 720 > th dose independent rect. 17 11
483 97.88 humidity 90.0 1440 > th dose dependent rect. 20 1
487 97.89 atmosphere 1010.0 270 < th dose dependent rect. 23 5
497 97.91 precipitation 0.1 90 > th dose dependent sin 7 NA
511 97.93 precipitation 0.1 90 > th dose independent sin 7 NA
559 98.01 radiation 1.0 1440 > th dose independent rect. 11 8
561 98.01 radiation 1.0 1440 < th dose independent rect. 11 9
590 98.02 radiation 1.0 1440 < th dose independent rect. 11 16
614 98.07 temperature 20.0 90 > th dose independent rect. 1 5
655 98.09 radiation 1.0 1440 < th dose dependent sin 22 NA
677 98.10 wind 5.0 720 < th dose independent rect. 17 15
686 98.11 wind 5.0 720 > th dose independent rect. 21 2
718 98.13 radiation 1.0 30 < th dose independent rect. 5 23
769 98.16 temperature 30.0 90 > th dose independent rect. 10 1
796 98.17 radiation 1.0 1440 < th dose dependent rect. 18 22
809 98.18 atmosphere 1005.0 10 < th dose dependent rect. 1 5
815 98.18 radiation 1.0 30 < th dose dependent rect. 5 23
816 98.19 precipitation 0.1 30 > th dose independent sin 3 NA
819 98.19 precipitation 0.1 30 > th dose dependent sin 3 NA
824 98.20 wind 1.0 1440 > th dose independent rect. 23 1
826 98.20 atmosphere 1005.0 720 < th dose independent rect. 18 6
849 98.22 radiation 1.0 1440 < th dose dependent rect. 5 11
894 98.28 radiation 1.0 1440 > th dose independent sin 21 NA
940 98.30 radiation 1.0 1440 < th dose independent sin 21 NA
950 98.30 wind 1.0 90 < th dose independent rect. 7 21
957 98.31 wind 9.0 4320 < th dose independent rect. 18 1
989 98.33 atmosphere 1010.0 270 < th dose dependent rect. 23 8