Os11g0172800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os11g0172800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.52 | 0.292 | 3.13 | -0.0534 | 0.166 | -0.63 | -0.0651 | 2.37 | -0.0593 | 9.06 | 50 | 7 | -- | -- |
| 40.27 | 0.296 | 3.12 | -0.0666 | 0.164 | -0.367 | -0.229 | -- | -0.064 | 8.94 | 51.12 | 6 | -- | -- |
| 38.54 | 0.289 | 3.13 | -0.0551 | 0.166 | -0.634 | -- | 2.41 | -0.0591 | 9.12 | 50 | 6 | -- | -- |
| 40.44 | 0.296 | 3.12 | -0.0745 | 0.165 | -0.373 | -- | -- | -0.0639 | 8.84 | 51.35 | 6 | -- | -- |
| 40.13 | 0.295 | 3.13 | -0.0559 | -- | -0.661 | -- | 2.44 | -0.0575 | -- | 50.43 | 6 | -- | -- |
| 41.96 | 0.304 | 3.13 | -0.0636 | 0.174 | -- | -0.244 | -- | -0.0783 | 9.62 | -- | -- | -- | -- |
| 42.18 | 0.304 | 3.13 | -0.0727 | 0.175 | -- | -- | -- | -0.0787 | 9.66 | -- | -- | -- | -- |
| 42 | 0.302 | 3.13 | -0.0743 | -- | -0.392 | -- | -- | -0.0619 | -- | 51.53 | 6 | -- | -- |
| 40.59 | 0.297 | 3.12 | -- | 0.165 | -0.373 | -- | -- | -0.0557 | 8.87 | 51.45 | 6 | -- | -- |
| 44 | 0.31 | 3.13 | -0.0742 | -- | -- | -- | -- | -0.0784 | -- | -- | -- | -- | -- |
| 42.32 | 0.304 | 3.13 | -- | 0.175 | -- | -- | -- | -0.0706 | 9.69 | -- | -- | -- | -- |
| 42.14 | 0.302 | 3.13 | -- | -- | -0.392 | -- | -- | -0.0537 | -- | 51.57 | 6 | -- | -- |
| 44.15 | 0.31 | 3.13 | -- | -- | -- | -- | -- | -0.0701 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.46 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 2 | 33.84 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 4 | 33.85 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 14 | 33.93 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 20 | 10 |
| 20 | 34.45 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 23 | 34.72 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 33 | 34.72 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 43 | 34.83 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 50 | 35.62 | atmosphere | 1010.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 52 | 35.81 | radiation | 10.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 66 | 35.88 | atmosphere | 1010.0 | 90 | > th | dose dependent | rect. | 11 | 1 |
| 87 | 35.95 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 88 | 35.95 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 103 | 36.09 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 184 | 36.15 | wind | 9.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 230 | 36.40 | atmosphere | 1010.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 371 | 36.53 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 377 | 36.53 | humidity | 90.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 379 | 36.53 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 10 | 1 |
| 394 | 36.53 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 400 | 36.53 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 402 | 36.53 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 742 | 36.85 | humidity | 50.0 | 30 | > th | dose independent | sin | 8 | NA |
| 782 | 36.96 | wind | 9.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 885 | 37.33 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 982 | 37.50 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 18 | 1 |