Os11g0172700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os11g0172700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 262.22 | 0.761 | 2.09 | 2.7 | 0.137 | -118 | -0.443 | 305 | -0.322 | 8.64 | 50.15 | 100 | 1.58 | -- |
| 288.86 | 0.798 | 3.08 | 0.235 | 0.144 | -0.457 | -0.535 | -- | -0.31 | 7.43 | 42.84 | 163 | 5.4 | -- |
| 262.69 | 0.755 | 2.1 | 2.69 | 0.138 | -118 | -- | 305 | -0.322 | 9.98 | 50.16 | 100 | 1.63 | -- |
| 287.88 | 0.795 | 3.08 | 0.215 | 0.163 | -0.479 | -- | -- | -0.325 | 10.8 | 62.38 | 82 | 4.08 | -- |
| 263.81 | 0.756 | 2.1 | 2.7 | -- | -118 | -- | 307 | -0.319 | -- | 50.15 | 100 | 1.65 | -- |
| 289.46 | 0.798 | 3.08 | 0.217 | 0.137 | -- | -0.585 | -- | -0.308 | 7.3 | -- | -- | -- | -- |
| 289.89 | 0.797 | 3.07 | 0.208 | 0.158 | -- | -- | -- | -0.305 | 9.62 | -- | -- | -- | -- |
| 288.71 | 0.791 | 3.08 | 0.214 | -- | -0.441 | -- | -- | -0.332 | -- | 62.92 | 84 | 4.14 | -- |
| 288.35 | 0.791 | 3.09 | -- | 0.164 | -0.467 | -- | -- | -0.354 | 11.1 | 63.47 | 81 | 3.95 | -- |
| 291.37 | 0.798 | 3.08 | 0.206 | -- | -- | -- | -- | -0.305 | -- | -- | -- | -- | -- |
| 291.02 | 0.798 | 3.08 | -- | 0.158 | -- | -- | -- | -0.328 | 9.52 | -- | -- | -- | -- |
| 289.94 | 0.793 | 3.09 | -- | -- | -0.425 | -- | -- | -0.355 | -- | 63 | 83 | 4.09 | -- |
| 292.49 | 0.798 | 3.08 | -- | -- | -- | -- | -- | -0.327 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 257.92 | radiation | 10 | 30 | < th | dose dependent | rect. | 10 | 2 |
| 2 | 257.95 | radiation | 10 | 10 | < th | dose independent | rect. | 10 | 2 |
| 30 | 261.00 | humidity | 50 | 90 | < th | dose dependent | rect. | 12 | 2 |
| 51 | 261.23 | humidity | 50 | 30 | < th | dose independent | rect. | 12 | 2 |
| 121 | 261.82 | radiation | 10 | 30 | < th | dose independent | rect. | 7 | 6 |
| 276 | 263.10 | radiation | 10 | 30 | < th | dose dependent | rect. | 8 | 5 |
| 434 | 266.86 | humidity | 50 | 90 | < th | dose dependent | sin | 7 | NA |
| 476 | 268.14 | radiation | 10 | 90 | < th | dose independent | rect. | 19 | 18 |
| 486 | 268.48 | wind | 3 | 10 | > th | dose independent | rect. | 7 | 4 |
| 496 | 269.14 | humidity | 50 | 10 | < th | dose dependent | sin | 12 | NA |
| 503 | 269.40 | humidity | 50 | 10 | > th | dose independent | sin | 13 | NA |
| 511 | 269.73 | humidity | 50 | 10 | < th | dose independent | sin | 13 | NA |
| 518 | 270.05 | wind | 3 | 10 | > th | dose independent | rect. | 9 | 1 |
| 527 | 270.35 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 24 | 2 |
| 530 | 270.40 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 24 | 2 |
| 533 | 270.44 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 1 |
| 540 | 270.44 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 598 | 271.78 | wind | 3 | 90 | > th | dose independent | rect. | 11 | 3 |
| 601 | 271.86 | radiation | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 619 | 272.29 | radiation | 20 | 30 | < th | dose dependent | rect. | 20 | 17 |
| 639 | 272.65 | radiation | 1 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 672 | 273.29 | radiation | 40 | 90 | > th | dose independent | rect. | 12 | 2 |
| 679 | 273.35 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 1 |
| 767 | 274.20 | radiation | 40 | 90 | > th | dose independent | rect. | 12 | 4 |
| 787 | 274.26 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 3 |
| 788 | 274.26 | radiation | 10 | 90 | < th | dose independent | rect. | 23 | 14 |
| 795 | 274.39 | humidity | 50 | 90 | < th | dose independent | sin | 7 | NA |
| 826 | 274.65 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 24 | 4 |
| 830 | 274.69 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 1 | 2 |
| 853 | 275.09 | wind | 1 | 30 | > th | dose dependent | rect. | 7 | 3 |
| 858 | 275.17 | radiation | 10 | 30 | > th | dose independent | rect. | 16 | 20 |
| 865 | 275.30 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 876 | 275.41 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 892 | 275.48 | atmosphere | 1010 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 904 | 275.58 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 915 | 275.63 | radiation | 10 | 30 | > th | dose independent | rect. | 14 | 23 |
| 939 | 275.69 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 1 |
| 966 | 275.80 | radiation | 20 | 10 | > th | dose independent | rect. | 7 | 3 |