Os11g0172300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0172300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.1 | 0.367 | 6.34 | 2.14 | 0.366 | -0.843 | -0.073 | -1.34 | 0.823 | 22.6 | 25.4 | 318 | -- | -- |
| 61.54 | 0.365 | 6.32 | 2.31 | 0.398 | -0.973 | -0.0549 | -- | 0.87 | 22.4 | 25.3 | 362 | -- | -- |
| 61.13 | 0.364 | 6.34 | 2.15 | 0.366 | -0.847 | -- | -1.34 | 0.824 | 22.6 | 25.4 | 318 | -- | -- |
| 61.55 | 0.365 | 6.32 | 2.31 | 0.402 | -0.977 | -- | -- | 0.871 | 22.4 | 25.29 | 364 | -- | -- |
| 65.21 | 0.376 | 6.33 | 2.21 | -- | -0.979 | -- | -1 | 0.843 | -- | 25.4 | 77 | -- | -- |
| 78.08 | 0.414 | 6.33 | 2.16 | 0.507 | -- | 0.192 | -- | 0.805 | 2.3 | -- | -- | -- | -- |
| 78.22 | 0.414 | 6.33 | 2.15 | 0.507 | -- | -- | -- | 0.804 | 2.23 | -- | -- | -- | -- |
| 65.39 | 0.377 | 6.31 | 2.33 | -- | -1.05 | -- | -- | 0.883 | -- | 25.22 | 56 | -- | -- |
| 197.83 | 0.659 | 6.38 | -- | 0.409 | -0.371 | -- | -- | 0.584 | 2.13 | 25.29 | 364 | -- | -- |
| 93.51 | 0.452 | 6.32 | 2.17 | -- | -- | -- | -- | 0.816 | -- | -- | -- | -- | -- |
| 200.05 | 0.662 | 6.38 | -- | 0.548 | -- | -- | -- | 0.564 | 2.31 | -- | -- | -- | -- |
| 204.55 | 0.668 | 6.37 | -- | -- | -0.739 | -- | -- | 0.608 | -- | 25.29 | 364 | -- | -- |
| 217.88 | 0.689 | 6.38 | -- | -- | -- | -- | -- | 0.575 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.82 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 3 | 60.04 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 14 |
| 5 | 60.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 26 | 60.78 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 9 |
| 31 | 60.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 37 | 60.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 48 | 60.95 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 22 |
| 50 | 60.97 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 23 |
| 65 | 61.14 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 89 | 61.33 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 93 | 61.34 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 101 | 61.36 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 105 | 61.38 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 23 |
| 149 | 61.52 | temperature | 30 | 720 | < th | dose independent | sin | 6 | NA |
| 168 | 61.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 186 | 61.68 | temperature | 30 | 720 | > th | dose independent | sin | 6 | NA |
| 190 | 61.69 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 205 | 61.76 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 227 | 61.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 260 | 61.98 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 16 |
| 273 | 62.08 | humidity | 60 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 278 | 62.10 | temperature | 25 | 270 | > th | dose dependent | sin | 22 | NA |
| 294 | 62.16 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 23 |
| 318 | 62.23 | humidity | 60 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 319 | 62.23 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 10 |
| 333 | 62.23 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 337 | 62.24 | temperature | 30 | 270 | > th | dose independent | sin | 23 | NA |
| 356 | 62.25 | temperature | 30 | 270 | > th | dose independent | rect. | 16 | 23 |
| 363 | 62.26 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 383 | 62.28 | temperature | 30 | 270 | < th | dose independent | sin | 23 | NA |
| 388 | 62.29 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 539 | 62.43 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 10 |
| 591 | 62.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 608 | 62.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 729 | 62.67 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 23 |
| 733 | 62.68 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 738 | 62.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 846 | 62.80 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 855 | 62.81 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 858 | 62.81 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 948 | 62.93 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 2 |