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Os11g0171700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SMAD/FHA domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.26 (0.0334) R2 : 0.76
β1 : 1.57 (0.123) R2dD : 0.0748 R2D : 0.0408
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.8 (0.103) R2dE : 0.718 R2E : 0.684
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0161 (0.0716) R2dN8 : -0.000101 R2N8 : -0.00037
σ : 0.624
deviance : 179.37
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C
peak time of C : --
E
wheather : temperature
threshold : -23.6
memory length : 816
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.8
open length of G : 15.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.59 0.599 7.26 1.67 3.32 -1.75 -0.218 2.52 0.106 19.3 10.8 240 15.1 15.4
170.95 0.609 7.28 1.43 3.29 -1.7 0.516 -- 0.0665 19.4 6.676 221 15.3 15.4
162.56 0.594 7.25 1.69 3.31 -1.69 -- 2.74 0.114 19.2 11.7 229 15.1 15.6
171.08 0.609 7.3 1.36 3.31 -1.71 -- -- 0.0205 19.4 7.606 234 15.2 15.2
235.13 0.714 7.19 1.85 -- -3.09 -- 2.98 0.235 -- -3.572 697 16.7 16.5
204.14 0.67 7.31 1.17 3.12 -- -0.215 -- -0.135 18 -- -- -- --
204.25 0.669 7.31 1.18 3.11 -- -- -- -0.136 18 -- -- -- --
179.37 0.624 7.26 1.57 -- -3.8 -- -- -0.0161 -- -23.6 816 15.8 15.5
217.88 0.687 7.33 -- 3.24 -1.41 -- -- -0.171 19.3 5.081 190 15.6 15
706.92 1.24 7.26 1.09 -- -- -- -- -0.207 -- -- -- -- --
240.73 0.726 7.34 -- 3.1 -- -- -- -0.267 18 -- -- -- --
222.76 0.695 7.26 -- -- -3.35 -- -- -0.186 -- -150 943 15 14.5
737.99 1.27 7.29 -- -- -- -- -- -0.327 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.29 temperature 10.0 270 > th dose dependent rect. 15 15
17 167.48 temperature 20.0 270 > th dose independent rect. 14 17
23 168.02 temperature 15.0 10 > th dose dependent rect. 16 15
53 170.21 temperature 30.0 270 < th dose dependent rect. 19 7
58 170.38 temperature 30.0 270 < th dose dependent rect. 21 4
87 171.79 temperature 30.0 270 < th dose dependent rect. 23 1
116 172.63 temperature 15.0 10 > th dose dependent sin 11 NA
136 173.24 atmosphere 1010.0 270 < th dose independent rect. 15 15
137 173.25 temperature 30.0 10 < th dose dependent rect. 23 5
162 173.77 atmosphere 1010.0 270 < th dose independent rect. 13 8
181 174.34 wind 1.0 90 > th dose independent rect. 22 17
194 174.74 temperature 10.0 270 > th dose dependent rect. 14 7
234 175.54 temperature 15.0 720 > th dose dependent rect. 17 8
236 175.61 radiation 20.0 10 < th dose independent rect. 15 8
252 175.86 temperature 20.0 270 > th dose independent rect. 1 20
264 176.04 temperature 15.0 270 > th dose independent rect. 13 8
304 176.57 wind 1.0 270 > th dose independent rect. 6 9
322 176.68 radiation 40.0 10 < th dose dependent rect. 14 9
325 176.69 wind 1.0 270 > th dose independent rect. 20 18
345 176.96 temperature 10.0 10 > th dose dependent rect. 16 7
348 176.97 radiation 10.0 30 < th dose independent rect. 2 21
352 177.01 temperature 20.0 270 > th dose independent rect. 1 8
354 177.03 temperature 10.0 270 > th dose dependent rect. 24 9
362 177.18 temperature 25.0 270 < th dose independent rect. 23 1
368 177.21 radiation 10.0 30 < th dose independent rect. 4 19
388 177.36 atmosphere 1000.0 90 > th dose independent rect. 15 7
401 177.44 humidity 50.0 90 > th dose independent rect. 22 17
410 177.53 wind 9.0 270 < th dose independent rect. 6 9
420 177.63 temperature 15.0 270 > th dose independent rect. 14 6
439 177.78 atmosphere 1000.0 10 > th dose independent rect. 15 8
458 177.90 atmosphere 1000.0 270 > th dose independent rect. 14 5
469 177.99 precipitation 0.1 270 < th dose independent rect. 6 9
470 177.99 precipitation 0.1 270 < th dose dependent rect. 6 9
479 178.04 wind 1.0 90 > th dose independent rect. 15 7
487 178.08 radiation 30.0 90 < th dose dependent rect. 15 18
491 178.10 temperature 10.0 270 > th dose independent rect. 6 9
492 178.10 atmosphere 1015.0 270 < th dose independent rect. 6 9
494 178.10 humidity 50.0 270 > th dose independent rect. 20 18
513 178.23 radiation 30.0 30 < th dose dependent rect. 2 21
525 178.27 humidity 50.0 270 > th dose independent rect. 6 9
528 178.29 radiation 40.0 270 < th dose independent rect. 15 15
529 178.29 precipitation 0.1 90 < th dose independent rect. 22 17
530 178.29 wind 9.0 270 < th dose independent rect. 20 18
533 178.29 precipitation 0.1 90 < th dose dependent rect. 22 17
534 178.30 precipitation 0.1 90 < th dose independent rect. 15 7
535 178.30 precipitation 0.1 270 < th dose independent rect. 20 18
537 178.30 precipitation 0.1 90 < th dose dependent rect. 15 7
538 178.30 precipitation 0.1 270 < th dose dependent rect. 20 18
540 178.32 temperature 15.0 270 > th dose independent rect. 24 23
560 178.43 temperature 10.0 90 > th dose independent rect. 22 17
614 178.66 atmosphere 995.0 90 > th dose independent rect. 22 17
620 178.68 temperature 10.0 270 > th dose independent rect. 20 18
621 178.68 atmosphere 995.0 270 > th dose independent rect. 20 18
629 178.73 temperature 30.0 10 < th dose dependent sin 11 NA
632 178.75 wind 9.0 90 < th dose independent rect. 22 17
633 178.75 radiation 40.0 270 < th dose independent rect. 1 18
637 178.77 atmosphere 995.0 270 > th dose independent rect. 6 9
646 178.80 precipitation 0.1 10 < th dose independent rect. 23 17
648 178.80 precipitation 0.1 10 < th dose dependent rect. 23 17
676 178.87 radiation 30.0 30 < th dose dependent rect. 4 19
694 178.95 temperature 10.0 10 > th dose independent rect. 16 7
696 178.95 atmosphere 1010.0 10 < th dose independent rect. 16 7
700 178.95 temperature 10.0 10 > th dose independent rect. 23 17
703 178.96 precipitation 0.1 10 < th dose independent rect. 16 7
704 178.96 radiation 10.0 30 < th dose independent rect. 24 23
705 178.96 precipitation 0.1 10 < th dose dependent rect. 16 7
714 178.97 temperature 25.0 10 < th dose dependent rect. 22 14
728 179.00 radiation 40.0 10 < th dose dependent rect. 12 11
740 179.03 atmosphere 995.0 10 > th dose independent rect. 23 16
741 179.03 wind 9.0 10 < th dose independent rect. 23 17
766 179.11 precipitation 0.1 270 < th dose independent rect. 19 7
767 179.11 precipitation 0.1 270 < th dose dependent rect. 19 7
770 179.12 temperature 10.0 1440 > th dose independent rect. 16 8
773 179.12 temperature 10.0 1440 > th dose independent rect. 24 16
808 179.24 radiation 1.0 270 > th dose independent rect. 15 15
809 179.25 atmosphere 995.0 270 > th dose independent rect. 15 15
810 179.25 radiation 30.0 90 < th dose dependent rect. 15 20
833 179.34 temperature 25.0 90 < th dose independent rect. 22 5
866 179.48 temperature 25.0 10 < th dose dependent rect. 6 22
900 179.60 atmosphere 995.0 10 > th dose dependent rect. 15 8
912 179.64 humidity 90.0 270 < th dose independent rect. 14 5
920 179.65 temperature 25.0 10 < th dose dependent rect. 8 20
939 179.69 radiation 20.0 90 < th dose independent rect. 15 18
942 179.70 temperature 10.0 270 > th dose independent rect. 19 7
943 179.70 temperature 30.0 270 < th dose independent rect. 19 7
944 179.70 humidity 50.0 270 > th dose independent rect. 19 7
945 179.70 atmosphere 995.0 270 > th dose independent rect. 19 7
946 179.70 radiation 1.0 270 < th dose independent rect. 19 7
953 179.70 atmosphere 1015.0 270 < th dose independent rect. 2 17
957 179.70 radiation 1.0 270 < th dose dependent rect. 19 7
964 179.71 wind 9.0 270 < th dose independent rect. 15 15
969 179.74 wind 9.0 270 < th dose independent rect. 19 7