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Os11g0171500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calcium-dependent protein kinase SK5 (EC 2.7.1.-) (CDPK).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0229) R2 : 0.732
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.35 (0.0709) R2dC : 0.981 R2C : -0.0149
β3 : -1.97 (0.0703) R2dE : 0.705 R2E : -0.277
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.349 (0.0483) R2dN8 : 0.0381 R2N8 : 0.0249
σ : 0.431
deviance : 85.7
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C
peak time of C : 15.1
E
wheather : radiation
threshold : 0.7
memory length : 330
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 1.24
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.46 0.405 11.7 0.654 2.48 -2.02 -0.206 0.265 0.413 15.1 0.6991 321 0.513 --
74.43 0.402 11.7 0.65 2.39 -1.98 -0.00867 -- 0.412 15.1 0.6985 327 1 --
74.39 0.402 11.7 0.652 2.44 -2.03 -- 0.133 0.409 15.1 0.69 327 0.854 --
74.38 0.402 11.7 0.655 2.4 -2.01 -- -- 0.416 15.1 0.69 332 1.1 --
110.62 0.49 11.7 0.616 -- -1.92 -- 0.393 0.42 -- -19.64 158 1.1 --
110.61 0.493 11.8 0.606 1.93 -- -0.419 -- 0.423 18.2 -- -- -- --
111.04 0.493 11.8 0.611 1.93 -- -- -- 0.421 18.2 -- -- -- --
111.04 0.491 11.7 0.611 -- -1.93 -- -- 0.421 -- -21.08 168 1.18 --
85.7 0.431 11.7 -- 2.35 -1.97 -- -- 0.349 15.1 0.7 330 1.24 --
303.72 0.814 11.7 0.558 -- -- -- -- 0.379 -- -- -- -- --
120.87 0.514 11.8 -- 1.92 -- -- -- 0.353 18.2 -- -- -- --
120.87 0.512 11.7 -- -- -1.92 -- -- 0.353 -- -22.51 200 1.43 --
311.93 0.824 11.7 -- -- -- -- -- 0.317 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.16 temperature 10.0 270 > th dose dependent rect. 12 17
3 72.39 wind 7.0 270 < th dose independent rect. 18 17
5 72.92 temperature 20.0 270 > th dose independent rect. 12 17
6 73.33 humidity 50.0 270 > th dose dependent rect. 22 9
11 73.80 radiation 1.0 270 > th dose independent rect. 4 9
40 74.49 temperature 20.0 270 > th dose independent rect. 12 6
42 74.59 precipitation 0.1 270 < th dose independent rect. 18 17
43 74.59 precipitation 0.1 270 < th dose dependent rect. 18 17
44 74.71 temperature 20.0 90 > th dose independent rect. 14 16
50 74.94 wind 9.0 270 < th dose independent rect. 17 8
51 75.06 wind 1.0 270 > th dose independent rect. 11 7
55 75.16 temperature 10.0 270 > th dose independent rect. 11 7
56 75.16 atmosphere 1015.0 270 < th dose independent rect. 11 7
57 75.16 temperature 10.0 270 > th dose independent rect. 18 17
58 75.17 temperature 10.0 270 > th dose independent rect. 17 8
59 75.17 radiation 20.0 270 < th dose independent rect. 17 8
62 75.17 temperature 10.0 270 > th dose independent rect. 1 16
63 75.17 atmosphere 1015.0 270 < th dose independent rect. 1 16
66 75.18 radiation 40.0 270 < th dose dependent rect. 17 8
68 75.19 humidity 50.0 270 > th dose independent rect. 17 8
76 75.41 precipitation 0.1 270 < th dose independent rect. 17 8
77 75.41 humidity 50.0 270 > th dose independent rect. 18 17
79 75.41 precipitation 0.1 270 < th dose dependent rect. 17 8
80 75.52 atmosphere 995.0 270 > th dose independent rect. 18 17
83 75.58 temperature 10.0 270 > th dose dependent rect. 5 7
88 75.83 radiation 20.0 270 < th dose dependent rect. 23 8
89 75.84 wind 9.0 270 < th dose independent rect. 11 7
90 75.90 precipitation 0.1 270 < th dose independent rect. 11 7
91 75.90 precipitation 0.1 270 < th dose dependent rect. 11 7
92 75.91 temperature 20.0 10 > th dose independent rect. 14 18
106 76.12 wind 9.0 270 < th dose independent rect. 1 16
110 76.22 wind 9.0 270 < th dose independent rect. 5 8
111 76.23 precipitation 0.1 270 < th dose independent rect. 5 8
112 76.23 precipitation 0.1 270 < th dose dependent rect. 5 8
129 76.44 temperature 10.0 270 > th dose independent rect. 5 8
130 76.44 atmosphere 995.0 270 > th dose independent rect. 5 8
131 76.44 atmosphere 1015.0 270 < th dose independent rect. 5 8
132 76.44 temperature 10.0 270 > th dose independent rect. 13 16
133 76.47 radiation 1.0 270 > th dose independent rect. 11 8
166 76.62 atmosphere 995.0 270 > th dose independent rect. 17 8
178 76.70 atmosphere 1015.0 270 < th dose independent rect. 22 9
185 76.77 precipitation 0.1 270 < th dose independent rect. 1 16
186 76.77 precipitation 0.1 270 < th dose dependent rect. 1 16
197 76.84 radiation 10.0 270 < th dose independent rect. 23 8
202 76.87 radiation 1.0 270 > th dose independent sin 6 NA
204 76.89 temperature 10.0 270 > th dose dependent rect. 12 6
207 76.93 radiation 1.0 270 < th dose independent sin 6 NA
221 77.08 atmosphere 995.0 270 > th dose independent rect. 1 16
225 77.12 radiation 1.0 270 < th dose independent rect. 15 9
227 77.13 wind 9.0 270 < th dose independent rect. 7 15
239 77.20 wind 9.0 270 < th dose independent rect. 13 16
258 77.34 temperature 10.0 10 > th dose dependent rect. 14 18
267 77.42 humidity 70.0 270 > th dose independent rect. 22 9
268 77.43 temperature 10.0 270 > th dose independent rect. 22 9
269 77.43 temperature 30.0 270 < th dose independent rect. 22 9
270 77.43 humidity 50.0 270 > th dose independent rect. 22 9
272 77.43 atmosphere 995.0 270 > th dose independent rect. 22 9
275 77.43 temperature 10.0 270 > th dose independent rect. 7 15
300 77.51 wind 9.0 270 < th dose independent rect. 22 9
313 77.61 precipitation 0.1 270 < th dose independent rect. 7 15
314 77.61 precipitation 0.1 270 < th dose dependent rect. 7 15
316 77.62 atmosphere 995.0 270 > th dose independent rect. 11 7
339 77.88 radiation 1.0 270 < th dose dependent sin 5 NA
355 77.93 radiation 1.0 270 < th dose dependent sin 18 NA
362 77.95 humidity 50.0 270 > th dose independent rect. 5 8
380 78.09 humidity 90.0 270 < th dose independent rect. 12 6
384 78.10 radiation 1.0 270 < th dose independent rect. 23 15
389 78.13 radiation 1.0 270 > th dose independent rect. 13 4
390 78.13 humidity 90.0 90 < th dose independent rect. 3 11
394 78.15 atmosphere 1015.0 270 < th dose independent rect. 12 18
418 78.29 temperature 30.0 270 < th dose independent rect. 17 8
467 78.49 precipitation 0.1 270 < th dose independent rect. 23 8
469 78.49 precipitation 0.1 270 < th dose dependent rect. 23 8
506 78.71 precipitation 0.1 270 < th dose independent rect. 13 16
509 78.71 precipitation 0.1 270 < th dose dependent rect. 13 16
510 78.76 radiation 1.0 270 < th dose independent sin 18 NA
515 78.78 radiation 1.0 270 > th dose independent sin 18 NA
568 79.07 wind 9.0 270 < th dose dependent rect. 17 7
607 79.24 atmosphere 995.0 270 > th dose independent rect. 13 16
660 79.43 wind 1.0 270 > th dose independent rect. 5 7
676 79.48 wind 1.0 270 > th dose independent rect. 18 17
769 79.80 temperature 30.0 90 < th dose dependent rect. 19 6
785 79.86 wind 1.0 270 > th dose independent rect. 17 8
800 79.94 radiation 1.0 270 < th dose dependent rect. 23 15
823 80.05 temperature 30.0 90 < th dose independent rect. 19 6
843 80.07 temperature 10.0 270 > th dose dependent rect. 23 7
918 80.28 temperature 10.0 10 > th dose dependent rect. 8 6
923 80.31 wind 1.0 270 > th dose dependent rect. 12 6
935 80.35 radiation 40.0 90 < th dose independent rect. 13 6
982 80.48 wind 9.0 270 < th dose dependent rect. 6 17