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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0168700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0824) R2 : 0.129
β1 : 3.13 (0.424) R2dD : 1.25 R2D : -1.6
β2 : -- (--) R2dC : -- R2C : --
β3 : -17 (2.54) R2dE : 10.8 R2E : -11.3
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 96.7 (14.6) R2dD*E : 11.1 R2D*E : -10.8
γ1 : 0.241 (0.0732) R2dN8 : 0.0281 R2N8 : -0.506
σ : 0.638
deviance : 187.91
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 999.5
memory length : 1026
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.77 0.64 3.01 3.01 0.195 -15.6 0.314 88.6 0.235 1.57 999.7 1043 -- --
201.68 0.667 3.48 0.483 0.171 -0.843 0.334 -- 0.226 1.06 997.8 1414 -- --
185.76 0.635 3.01 2.96 0.194 -15.8 -- 89.8 0.237 2.22 999.6 1033 -- --
202.08 0.666 3.48 0.47 0.176 -0.84 -- -- 0.224 1.8 997.8 1414 -- --
187.91 0.638 2.98 3.13 -- -17 -- 96.7 0.241 -- 999.5 1026 -- --
205.29 0.672 3.48 0.447 0.177 -- 0.327 -- 0.24 1.33 -- -- -- --
205.68 0.672 3.48 0.435 0.181 -- -- -- 0.238 2.01 -- -- -- --
203.96 0.668 3.48 0.478 -- -0.851 -- -- 0.227 -- 997.8 1414 -- --
207.86 0.675 3.49 -- 0.185 -0.739 -- -- 0.173 1.9 997.8 1414 -- --
207.66 0.673 3.47 0.442 -- -- -- -- 0.242 -- -- -- -- --
210.66 0.679 3.49 -- 0.19 -- -- -- 0.189 2.06 -- -- -- --
209.93 0.677 3.49 -- -- -0.749 -- -- 0.177 -- 997.8 1414 -- --
212.82 0.681 3.49 -- -- -- -- -- 0.193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.17 atmosphere 1e+03 1440 > th dose independent rect. 5 1
3 184.02 atmosphere 1e+03 1440 > th dose independent rect. 2 5
8 184.23 atmosphere 1e+03 1440 > th dose independent rect. 21 14
9 184.25 atmosphere 1e+03 1440 < th dose independent rect. 21 14
14 184.33 atmosphere 1e+03 1440 > th dose independent rect. 21 12
16 184.34 atmosphere 1e+03 1440 < th dose dependent rect. 3 4
17 184.34 atmosphere 1e+03 1440 < th dose dependent rect. 23 13
20 184.36 atmosphere 1e+03 1440 < th dose independent rect. 3 4
22 184.36 atmosphere 1e+03 1440 < th dose dependent rect. 21 15
25 184.38 atmosphere 1e+03 1440 < th dose dependent rect. 1 10
56 184.48 atmosphere 1e+03 1440 < th dose independent rect. 4 1
60 184.48 atmosphere 1e+03 1440 < th dose dependent rect. 4 1
89 184.59 atmosphere 1e+03 1440 > th dose independent rect. 1 10
198 185.33 precipitation 1e-01 4320 > th dose dependent rect. 16 3
229 185.83 precipitation 1e-01 4320 < th dose independent rect. 16 2
232 185.83 precipitation 1e-01 4320 < th dose dependent rect. 16 2
237 185.93 precipitation 1e-01 4320 > th dose independent rect. 16 2
241 186.02 atmosphere 1e+03 1440 < th dose independent rect. 7 1
247 186.05 atmosphere 1e+03 1440 < th dose dependent rect. 7 1
267 186.31 atmosphere 1e+03 14400 > th dose independent rect. 19 1
274 186.43 atmosphere 1e+03 14400 < th dose independent rect. 19 1
279 186.52 atmosphere 1e+03 1440 < th dose independent sin 8 NA
291 186.59 atmosphere 1e+03 1440 < th dose dependent sin 9 NA
303 186.77 atmosphere 1e+03 1440 < th dose dependent rect. 9 2
313 186.86 precipitation 1e-01 4320 > th dose dependent rect. 8 10
341 187.06 precipitation 1e-01 4320 > th dose dependent rect. 11 7
360 187.23 wind 9e+00 14400 > th dose dependent rect. 17 4
362 187.25 wind 9e+00 14400 > th dose dependent rect. 17 12
364 187.27 wind 9e+00 14400 > th dose dependent rect. 17 7
380 187.38 atmosphere 1e+03 1440 > th dose independent sin 8 NA
383 187.41 atmosphere 1e+03 14400 > th dose independent rect. 12 1
416 187.65 atmosphere 1e+03 14400 < th dose independent rect. 12 1
428 187.73 wind 9e+00 14400 < th dose independent rect. 18 6
433 187.78 atmosphere 1e+03 1440 > th dose independent rect. 9 2
436 187.80 wind 9e+00 14400 < th dose independent rect. 18 3
440 187.84 wind 9e+00 14400 > th dose independent rect. 18 3
444 187.86 wind 9e+00 14400 < th dose independent rect. 20 4
445 187.87 wind 9e+00 14400 > th dose independent rect. 18 6
461 187.99 atmosphere 1e+03 14400 < th dose independent rect. 12 9
462 187.99 wind 9e+00 14400 > th dose independent rect. 18 10
467 188.01 atmosphere 1e+03 14400 > th dose independent rect. 12 9
493 188.08 wind 9e+00 14400 > th dose independent rect. 20 4
496 188.09 wind 7e+00 14400 > th dose independent rect. 20 1
525 188.16 wind 9e+00 14400 > th dose independent rect. 20 8
576 188.29 atmosphere 1e+03 14400 > th dose independent rect. 12 5
584 188.30 wind 9e+00 14400 > th dose dependent rect. 20 4
589 188.31 wind 9e+00 14400 > th dose dependent rect. 20 8
593 188.33 atmosphere 1e+03 14400 > th dose independent rect. 16 1
661 188.42 atmosphere 1e+03 14400 > th dose independent sin 21 NA
670 188.44 atmosphere 1e+03 14400 < th dose independent sin 20 NA
680 188.44 atmosphere 1e+03 720 < th dose dependent rect. 22 17
843 188.65 wind 1e+00 4320 > th dose independent rect. 10 1
868 188.67 wind 9e+00 14400 < th dose independent rect. 17 16