Os11g0162700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os11g0162700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.93 | 0.39 | 8.05 | -1.1 | 0.736 | -1.23 | 1.08 | -1.83 | 0.259 | 3.34 | 24.23 | 23 | -- | -- |
| 73.26 | 0.402 | 8.08 | -1.34 | 0.716 | -1.04 | 0.49 | -- | 0.21 | 3.47 | 24.23 | 23 | -- | -- |
| 71.64 | 0.397 | 8.06 | -1.2 | 0.727 | -1.19 | -- | -1.21 | 0.245 | 3.37 | 23.87 | 25 | -- | -- |
| 74 | 0.403 | 8.08 | -1.35 | 0.718 | -1.05 | -- | -- | 0.207 | 3.44 | 24.23 | 23 | -- | -- |
| 98.97 | 0.466 | 8.05 | -1.13 | -- | -0.837 | -- | -0.937 | 0.317 | -- | 23.4 | 19 | -- | -- |
| 88.95 | 0.442 | 8.04 | -1.11 | 0.58 | -- | 0.551 | -- | 0.386 | 4.18 | -- | -- | -- | -- |
| 89.8 | 0.444 | 8.04 | -1.11 | 0.583 | -- | -- | -- | 0.383 | 4.16 | -- | -- | -- | -- |
| 100.39 | 0.469 | 8.07 | -1.24 | -- | -0.731 | -- | -- | 0.297 | -- | 23.4 | 19 | -- | -- |
| 118.03 | 0.509 | 8.03 | -- | 0.623 | -0.529 | -- | -- | 0.432 | 3.77 | 24.19 | 11 | -- | -- |
| 108.2 | 0.486 | 8.04 | -1.09 | -- | -- | -- | -- | 0.398 | -- | -- | -- | -- | -- |
| 122.46 | 0.518 | 8.01 | -- | 0.561 | -- | -- | -- | 0.507 | 4.19 | -- | -- | -- | -- |
| 138.08 | 0.549 | 8.03 | -- | -- | -0.308 | -- | -- | 0.485 | -- | 23.18 | 31 | -- | -- |
| 139.52 | 0.551 | 8.02 | -- | -- | -- | -- | -- | 0.519 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.37 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 22 |
| 9 | 68.59 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 25 | 69.34 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 26 | 69.36 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 27 | 69.36 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 29 | 69.37 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 30 | 69.40 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 32 | 69.41 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 34 | 69.46 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 40 | 69.56 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 41 | 69.57 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 45 | 69.68 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 57 | 69.75 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 128 | 70.77 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 195 | 71.35 | temperature | 25.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 259 | 71.87 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 265 | 71.92 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 270 | 71.95 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 271 | 71.96 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 11 |
| 312 | 72.25 | temperature | 30.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 342 | 72.42 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 11 |
| 345 | 72.44 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 369 | 72.56 | temperature | 10.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 381 | 72.60 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 409 | 72.74 | temperature | 10.0 | 10 | > th | dose dependent | sin | 8 | NA |
| 426 | 72.80 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 469 | 73.00 | temperature | 25.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 481 | 73.07 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 516 | 73.25 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 589 | 73.53 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 11 |
| 625 | 73.70 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 637 | 73.75 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 639 | 73.76 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 663 | 73.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 670 | 73.88 | temperature | 20.0 | 10 | < th | dose independent | rect. | 24 | 22 |
| 680 | 73.90 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 689 | 73.92 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 690 | 73.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 691 | 73.92 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 23 |
| 693 | 73.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 782 | 74.25 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 17 |
| 786 | 74.27 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 790 | 74.28 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 809 | 74.32 | temperature | 20.0 | 10 | < th | dose independent | sin | 7 | NA |
| 824 | 74.37 | temperature | 20.0 | 10 | > th | dose independent | sin | 7 | NA |
| 831 | 74.38 | temperature | 20.0 | 10 | < th | dose independent | rect. | 17 | 20 |
| 853 | 74.42 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 870 | 74.45 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 23 |
| 910 | 74.54 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 21 |
| 919 | 74.55 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 23 |
| 984 | 74.69 | temperature | 20.0 | 10 | < th | dose independent | no | NA | NA |
| 991 | 74.70 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 992 | 74.70 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 999 | 74.71 | temperature | 20.0 | 10 | > th | dose independent | no | NA | NA |