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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0160400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.33 (0.102) R2 : 0.365
β1 : 4.03 (0.346) R2dD : 0.295 R2D : 0.137
β2 : 1.95 (0.187) R2dC : 0.153 R2C : 0.135
β3 : -5.71 (1.41) R2dE : 0.274 R2E : -0.185
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.4 (6.47) R2dD*E : 0.0849 R2D*E : -0.167
γ1 : 0.566 (0.169) R2dN8 : 0.0221 R2N8 : -0.0179
σ : 1.44
deviance : 954.75
__
_____
C
peak time of C : 10.1
E
wheather : wind
threshold : 8.644
memory length : 1780
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
954.35 1.45 6.34 4.02 1.95 -5.78 0.329 -14.8 0.563 10.1 8.603 1780 -- --
975.57 1.45 6.18 3.33 2.02 -4.09 0.0675 -- 0.535 10.2 10.5 820 -- --
954.75 1.44 6.33 4.03 1.95 -5.71 -- -14.4 0.566 10.1 8.644 1780 -- --
974.31 1.45 6.2 3.38 1.98 -3.72 -- -- 0.497 10.1 10.6 816 -- --
1180.89 1.6 6.38 3.94 -- -5.45 -- -14.1 0.566 -- 8.8 1729 -- --
1047.59 1.52 6.24 3.08 1.86 -- 0.322 -- 0.372 10.1 -- -- -- --
1047.99 1.52 6.24 3.1 1.85 -- -- -- 0.373 10.2 -- -- -- --
1170.44 1.59 6.25 3.43 -- -2.84 -- -- 0.55 -- 10.42 1665 -- --
1265.29 1.66 6.31 -- 1.89 -2.93 -- -- 0.124 9.81 10.4 706 -- --
1255.87 1.66 6.29 3.07 -- -- -- -- 0.37 -- -- -- -- --
1300.65 1.69 6.31 -- 1.84 -- -- -- 0.0282 10 -- -- -- --
1469.43 1.79 6.33 -- -- -1.99 -- -- 0.102 -- 10.4 1685 -- --
1504.55 1.81 6.36 -- -- -- -- -- 0.0291 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 940.10 wind 9 1440 < th dose independent rect. 21 10
4 950.30 wind 9 4320 < th dose independent rect. 19 1
5 950.66 temperature 15 270 > th dose dependent rect. 15 11
7 952.27 wind 7 720 > th dose dependent rect. 18 16
9 953.38 radiation 10 4320 > th dose independent rect. 17 1
22 953.49 wind 7 720 > th dose independent rect. 19 15
26 955.15 wind 9 4320 > th dose independent rect. 19 1
27 955.15 wind 9 4320 > th dose dependent rect. 19 1
28 955.97 wind 9 14400 > th dose dependent rect. 12 1
37 958.33 wind 7 720 < th dose independent rect. 5 22
38 958.88 wind 5 90 < th dose independent rect. 16 11
39 959.05 radiation 10 720 < th dose independent rect. 16 7
41 959.44 wind 9 1440 < th dose independent rect. 21 4
42 959.45 wind 7 1440 > th dose dependent rect. 21 13
47 959.91 temperature 25 90 < th dose dependent rect. 10 19
49 960.01 wind 7 270 > th dose dependent sin 11 NA
56 960.73 wind 7 720 < th dose independent rect. 21 23
58 960.94 wind 7 1440 > th dose independent rect. 21 13
60 961.07 wind 7 1440 > th dose dependent rect. 21 16
61 961.15 wind 7 720 > th dose independent sin 9 NA
63 961.21 wind 9 1440 < th dose independent rect. 22 6
67 961.56 temperature 20 270 > th dose dependent sin 15 NA
68 961.60 wind 7 720 > th dose dependent sin 9 NA
69 961.65 wind 7 720 < th dose independent rect. 7 19
70 961.76 wind 7 1440 > th dose independent rect. 21 16
71 961.77 wind 1 4320 > th dose dependent rect. 21 6
75 962.11 wind 7 720 < th dose independent rect. 8 17
76 962.14 wind 7 720 < th dose independent sin 7 NA
77 962.25 wind 9 1440 < th dose independent rect. 19 9
78 962.27 wind 1 4320 > th dose dependent rect. 21 8
82 962.58 radiation 20 720 < th dose dependent rect. 16 7
84 962.78 wind 7 720 > th dose independent rect. 19 18
91 963.05 temperature 15 14400 > th dose independent rect. 20 1
96 963.39 wind 9 4320 < th dose dependent rect. 21 6
100 963.50 wind 7 1440 < th dose independent rect. 21 16
101 963.55 wind 1 4320 > th dose dependent rect. 21 2
109 963.80 wind 9 4320 < th dose dependent rect. 21 8
112 963.94 temperature 25 270 < th dose independent rect. 11 18
113 964.06 temperature 25 10 < th dose dependent rect. 11 19
114 964.14 temperature 25 270 < th dose independent rect. 9 21
124 964.44 wind 9 1440 < th dose independent rect. 19 13
131 964.74 wind 7 720 < th dose independent rect. 15 10
132 964.74 wind 9 720 < th dose independent rect. 5 15
136 964.93 wind 7 720 < th dose independent rect. 15 12
138 964.96 wind 9 4320 < th dose dependent rect. 21 2
139 965.00 wind 1 14400 < th dose independent rect. 1 8
151 965.59 wind 9 1440 > th dose dependent rect. 21 20
155 965.76 wind 7 1440 < th dose independent rect. 12 1
160 965.88 wind 9 1440 < th dose independent rect. 19 6
170 966.26 wind 7 720 < th dose independent rect. 15 19
176 966.33 wind 7 1440 < th dose independent rect. 21 14
182 966.55 wind 9 4320 > th dose dependent rect. 16 1
185 966.63 wind 7 4320 > th dose dependent rect. 21 4
188 966.66 wind 1 14400 > th dose independent rect. 1 6
201 966.92 temperature 20 14400 < th dose dependent rect. 16 1
204 966.98 wind 1 14400 < th dose independent rect. 1 4
205 967.04 wind 7 4320 > th dose dependent rect. 21 1
223 967.46 wind 7 1440 > th dose independent rect. 12 1
233 967.70 wind 7 1440 > th dose dependent rect. 12 1
240 967.82 wind 7 720 > th dose dependent rect. 18 19
260 968.19 wind 9 1440 > th dose dependent rect. 1 16
264 968.23 wind 7 4320 > th dose independent rect. 21 4
269 968.25 wind 9 90 < th dose dependent rect. 17 10
270 968.30 wind 7 720 < th dose independent rect. 23 18
278 968.37 wind 9 1440 > th dose dependent rect. 11 6
288 968.41 temperature 25 270 > th dose independent rect. 14 17
290 968.48 wind 9 1440 > th dose dependent rect. 9 8
298 968.50 wind 9 1440 > th dose independent rect. 21 2
301 968.50 wind 9 720 < th dose independent rect. 8 9
305 968.57 wind 1 14400 > th dose independent rect. 1 4
342 969.17 radiation 20 90 < th dose dependent rect. 9 18
345 969.20 temperature 25 270 > th dose independent rect. 15 12
350 969.28 humidity 80 10 < th dose independent rect. 12 6
359 969.33 temperature 30 270 < th dose dependent rect. 17 12
365 969.38 humidity 70 90 > th dose dependent rect. 9 18
393 969.84 wind 9 4320 < th dose independent sin 10 NA
410 970.04 temperature 25 270 < th dose independent sin 15 NA
413 970.08 wind 9 1440 > th dose independent rect. 19 4
424 970.29 temperature 25 270 > th dose independent sin 16 NA
436 970.43 temperature 20 10 > th dose dependent sin 14 NA
453 970.58 temperature 30 270 < th dose dependent sin 16 NA
469 970.79 wind 9 720 < th dose independent rect. 13 14
477 970.83 temperature 20 720 > th dose dependent rect. 15 2
481 970.87 wind 9 1440 < th dose independent rect. 15 1
489 970.95 wind 7 1440 < th dose independent rect. 19 19
503 971.04 wind 9 1440 > th dose independent rect. 15 1
529 971.33 atmosphere 995 10 > th dose dependent rect. 20 22
553 971.53 temperature 10 720 > th dose dependent rect. 14 5
554 971.54 temperature 25 270 > th dose independent rect. 13 21
558 971.57 temperature 25 270 < th dose independent rect. 17 12
570 971.71 humidity 90 14400 > th dose independent rect. 1 5
571 971.71 wind 9 1440 > th dose independent rect. 21 20
601 972.02 temperature 10 10 > th dose dependent rect. 3 23
629 972.17 wind 9 1440 < th dose independent rect. 7 13
630 972.19 radiation 1 720 < th dose dependent rect. 3 15
645 972.32 wind 7 720 > th dose dependent rect. 15 22
650 972.35 temperature 15 14400 > th dose independent rect. 5 4
653 972.37 temperature 15 14400 > th dose independent rect. 6 2
655 972.38 humidity 60 43200 < th dose independent rect. 5 2
656 972.38 wind 9 1440 > th dose independent rect. 11 6
663 972.41 temperature 20 10 > th dose dependent rect. 14 14
679 972.59 atmosphere 1000 90 > th dose independent rect. 3 14
683 972.60 wind 9 1440 > th dose dependent rect. 19 4
687 972.63 temperature 15 10 > th dose dependent rect. 22 23
707 972.86 temperature 20 270 > th dose dependent rect. 13 21
718 972.92 wind 1 4320 > th dose dependent rect. 1 2
720 972.95 temperature 15 90 > th dose independent rect. 3 14
727 973.02 wind 9 1440 < th dose independent rect. 11 6
733 973.09 temperature 10 10 > th dose dependent rect. 3 15
734 973.10 temperature 20 270 > th dose dependent rect. 11 22
745 973.15 temperature 10 90 > th dose dependent rect. 23 22
761 973.29 wind 1 14400 < th dose independent rect. 5 3
781 973.47 wind 9 1440 < th dose independent rect. 11 9
792 973.57 atmosphere 995 30 > th dose dependent rect. 21 17
800 973.60 temperature 10 270 > th dose dependent rect. 11 23
821 973.76 wind 1 14400 < th dose dependent rect. 5 3
843 973.89 wind 9 1440 > th dose independent rect. 21 23
857 973.98 wind 9 4320 < th dose dependent rect. 1 2
879 974.18 atmosphere 1000 10 > th dose independent rect. 3 15
888 974.22 humidity 90 14400 > th dose independent rect. 4 2
899 974.32 radiation 10 14400 < th dose dependent rect. 11 3
906 974.36 wind 1 14400 < th dose dependent rect. 1 7
937 974.52 temperature 20 270 > th dose dependent rect. 11 17
944 974.57 wind 9 1440 < th dose independent rect. 1 19
953 974.65 wind 9 4320 > th dose dependent sin 10 NA
991 974.80 temperature 30 90 < th dose dependent rect. 19 23