Os11g0160300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os11g0160300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.09 | 0.413 | 3.28 | 1.7 | 0.551 | -1.28 | 1.87 | -4.69 | -0.0765 | 10.8 | 24.85 | 832 | -- | -- |
| 102.01 | 0.47 | 3.38 | 0.944 | 0.472 | -0.786 | 0.945 | -- | -0.179 | 10.9 | 34.84 | 1221 | -- | -- |
| 86.45 | 0.433 | 3.29 | 1.7 | 0.423 | -1.28 | -- | -4.29 | -0.0964 | 10.9 | 24.9 | 1463 | -- | -- |
| 105.55 | 0.478 | 3.38 | 0.952 | 0.448 | -0.816 | -- | -- | -0.206 | 11.2 | 35.65 | 1264 | -- | -- |
| 95.61 | 0.455 | 3.29 | 1.76 | -- | -1.17 | -- | -4.46 | -0.059 | -- | 25 | 1621 | -- | -- |
| 113.06 | 0.498 | 3.34 | 1.16 | 0.388 | -- | 0.895 | -- | -0.0635 | 10.9 | -- | -- | -- | -- |
| 116.41 | 0.505 | 3.34 | 1.2 | 0.385 | -- | -- | -- | -0.0611 | 10.7 | -- | -- | -- | -- |
| 111.95 | 0.495 | 3.38 | 1.01 | -- | -0.971 | -- | -- | -0.193 | -- | 35.65 | 1264 | -- | -- |
| 126.05 | 0.523 | 3.41 | -- | 0.49 | -1.17 | -- | -- | -0.373 | 10.2 | 35.79 | 2060 | -- | -- |
| 125.56 | 0.524 | 3.35 | 1.19 | -- | -- | -- | -- | -0.0632 | -- | -- | -- | -- | -- |
| 154.27 | 0.581 | 3.37 | -- | 0.377 | -- | -- | -- | -0.195 | 10.4 | -- | -- | -- | -- |
| 135.71 | 0.543 | 3.42 | -- | -- | -1.19 | -- | -- | -0.372 | -- | 41.07 | 1583 | -- | -- |
| 162.99 | 0.596 | 3.38 | -- | -- | -- | -- | -- | -0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 10 |
| 2 | 73.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 18 | 74.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 19 | 74.62 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 72 | 75.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 117 | 76.64 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 126 | 76.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 130 | 76.97 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 135 | 77.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 9 |
| 138 | 77.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 145 | 77.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 150 | 77.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 19 |
| 153 | 77.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 190 | 77.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 210 | 77.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 303 | 78.03 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 312 | 78.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 357 | 78.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 575 | 79.26 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 713 | 79.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 725 | 79.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |