Os11g0159900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0159900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.46 | 0.281 | 1890 | -11500 | 0.0657 | 472000 | -0.0832 | -2890000 | 0.048 | 6.93 | 995 | 90 | -- | -- |
| 52.3 | 0.339 | 2.96 | 0.0366 | 0.0175 | 1.73 | -0.267 | -- | 0.0391 | 5.28 | 995 | 90 | -- | -- |
| 36.47 | 0.281 | 1890 | -11500 | 0.0659 | 472000 | -- | -2890000 | 0.0482 | 7.46 | 995 | 90 | -- | -- |
| 24.09 | 0.229 | 2.96 | -0.0294 | 0.0228 | 5.67 | -- | -- | 0.0388 | 12.8 | 994.6 | 209 | -- | -- |
| 36.7 | 0.282 | 1890 | -11500 | -- | 472000 | -- | -2890000 | 0.0493 | -- | 995 | 90 | -- | -- |
| 55.57 | 0.349 | 2.96 | 0.048 | 0.00904 | -- | 0.333 | -- | 0.0342 | 16.8 | -- | -- | -- | -- |
| 55.8 | 0.35 | 2.96 | 0.05 | 0.0339 | -- | -- | -- | 0.036 | 11.8 | -- | -- | -- | -- |
| 24.07 | 0.229 | 2.96 | 0.0123 | -- | 5.63 | -- | -- | 0.0491 | -- | 994.6 | 207 | -- | -- |
| 23.93 | 0.228 | 2.96 | -- | 0.0228 | 5.66 | -- | -- | 0.0388 | 8.26 | 994.6 | 208 | -- | -- |
| 55.87 | 0.349 | 2.96 | 0.049 | -- | -- | -- | -- | 0.0356 | -- | -- | -- | -- | -- |
| 55.86 | 0.35 | 2.96 | -- | 0.0333 | -- | -- | -- | 0.0304 | 11.7 | -- | -- | -- | -- |
| 24.08 | 0.229 | 2.96 | -- | -- | 5.65 | -- | -- | 0.0466 | -- | 994.6 | 207 | -- | -- |
| 55.93 | 0.349 | 2.96 | -- | -- | -- | -- | -- | 0.0301 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.28 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 16 | 2 |
| 3 | 23.42 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 16 | 3 |
| 7 | 23.77 | atmosphere | 995 | 10 | > th | dose independent | sin | 8 | NA |
| 65 | 23.92 | atmosphere | 995 | 90 | < th | dose independent | sin | 9 | NA |
| 194 | 23.93 | atmosphere | 995 | 10 | < th | dose dependent | sin | 8 | NA |
| 359 | 24.39 | temperature | 30 | 10 | > th | dose independent | rect. | 17 | 1 |
| 378 | 24.54 | humidity | 70 | 30 | < th | dose independent | rect. | 18 | 1 |
| 491 | 25.93 | temperature | 30 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 529 | 26.83 | radiation | 10 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 549 | 28.00 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 1 |
| 772 | 34.63 | humidity | 70 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 789 | 35.14 | temperature | 30 | 10 | > th | dose independent | sin | 11 | NA |
| 810 | 35.96 | atmosphere | 995 | 270 | > th | dose independent | sin | 4 | NA |
| 860 | 36.30 | atmosphere | 995 | 270 | < th | dose independent | sin | 4 | NA |
| 865 | 36.46 | atmosphere | 995 | 270 | < th | dose dependent | sin | 5 | NA |
| 867 | 36.53 | atmosphere | 995 | 90 | < th | dose dependent | no | NA | NA |