Os11g0159500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0159500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.88 | 0.556 | 3.86 | 2.82 | 0.499 | -3.42 | 1.12 | -4.7 | 0.313 | 11.7 | 0.98 | 15908 | -- | -- |
| 153.76 | 0.578 | 3.67 | 3.86 | 0.783 | -3.21 | 0.923 | -- | 0.657 | 12.2 | 1.46 | 16066 | -- | -- |
| 141.03 | 0.553 | 3.87 | 2.85 | 0.164 | -3.36 | -- | -4.6 | 0.31 | 11.9 | 1.001 | 15712 | -- | -- |
| 157.24 | 0.584 | 3.68 | 3.87 | 0.706 | -3.12 | -- | -- | 0.688 | 12.4 | 1.51 | 16056 | -- | -- |
| 142.08 | 0.555 | 3.86 | 2.9 | -- | -3.45 | -- | -4.55 | 0.317 | -- | 1.088 | 15645 | -- | -- |
| 343.5 | 0.869 | 3.91 | 2.74 | 0.488 | -- | 1.14 | -- | -0.311 | 12.2 | -- | -- | -- | -- |
| 349.05 | 0.875 | 3.9 | 2.78 | 0.485 | -- | -- | -- | -0.306 | 11.9 | -- | -- | -- | -- |
| 157.97 | 0.585 | 3.71 | 3.91 | -- | -3.07 | -- | -- | 0.658 | -- | 1.381 | 17059 | -- | -- |
| 403.43 | 0.935 | 3.83 | -- | 0.234 | -2.53 | -- | -- | 0.00238 | 11.7 | 6.984 | 9948 | -- | -- |
| 363.86 | 0.891 | 3.92 | 2.77 | -- | -- | -- | -- | -0.312 | -- | -- | -- | -- | -- |
| 552.98 | 1.1 | 3.97 | -- | 0.453 | -- | -- | -- | -0.616 | 11.5 | -- | -- | -- | -- |
| 405.41 | 0.938 | 3.84 | -- | -- | -2.66 | -- | -- | 0.0187 | -- | 6.998 | 9840 | -- | -- |
| 565.84 | 1.11 | 3.98 | -- | -- | -- | -- | -- | -0.619 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.77 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 3 | 133.99 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 17 | 135.73 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 27 | 136.18 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 36 | 136.82 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 37 | 136.84 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 43 | 137.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 44 | 137.10 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 64 | 137.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 66 | 137.59 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 68 | 137.62 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 86 | 138.39 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 101 | 139.25 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 105 | 139.30 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 106 | 139.32 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 115 | 139.90 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 117 | 140.06 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 120 | 140.11 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 130 | 140.27 | radiation | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 137 | 140.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 139 | 140.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 146 | 140.36 | radiation | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 147 | 140.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 154 | 140.41 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 177 | 140.49 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 205 | 140.57 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 212 | 140.64 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 262 | 140.77 | radiation | 1 | 14400 | < th | dose independent | sin | 5 | NA |
| 266 | 140.78 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 287 | 140.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 292 | 140.89 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 310 | 140.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 322 | 141.15 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 332 | 141.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 373 | 141.36 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 385 | 141.44 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 464 | 141.70 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 467 | 141.71 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 468 | 141.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 550 | 141.89 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 572 | 141.97 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 578 | 142.01 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 583 | 142.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 589 | 142.04 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 19 |
| 647 | 142.20 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 21 |
| 650 | 142.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 20 |
| 660 | 142.23 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 21 |
| 670 | 142.24 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 680 | 142.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 721 | 142.31 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 754 | 142.47 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 14 |
| 759 | 142.49 | humidity | 90 | 43200 | < th | dose independent | sin | 20 | NA |
| 767 | 142.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 775 | 142.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 786 | 142.61 | humidity | 90 | 43200 | > th | dose independent | sin | 19 | NA |
| 815 | 142.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 866 | 142.95 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 870 | 142.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 22 |
| 871 | 142.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 893 | 143.00 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 932 | 143.14 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 942 | 143.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 977 | 143.24 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 978 | 143.25 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 996 | 143.31 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 5 |